An effective method to study the excited state behaviour and to compute vibrationally resolved optical spectra of large molecules in solution 1 IBB/Consiglio.

Slides:



Advertisements
Similar presentations
Modelling Water Dimer Band Intensities and Spectra Matt Barber Jonathan Tennyson University College London 10 th February 2011
Advertisements

The Refractive Index of a Solid An unusual application of spectroscopy.
Molecular Bonds Molecular Spectra Molecules and Solids CHAPTER 10 Molecules and Solids Johannes Diderik van der Waals (1837 – 1923) “You little molecule!”
Optical absorption spectra of chromophores in solution: the role of the solvent Ralph Gebauer Monday, July 7 th, 2014 Mastani Summer School IISER – Pune.
Zero-Phonon Line: transition without creation or destruction of phonons Phonon Wing: at T = 0 K, creation of one or more phonons 7. Optical Spectroscopy.
Big Question: We can see rafts in Model Membranes (GUVs or Supported Lipid Bilayers, LM), but how to study in cells? Do rafts really exist in cells? Are.
Investigating excited state dynamics in 7-azaindole Nathan Erickson, Molly Beernink, and Nathaniel Swenson 1.
Marco Caricato Molecular Spectroscopy Symposium Ohio State University, Columbus, OH June 23, 2011 Gaussian, Inc. Wallingford, CT Excitation energy in solution.
Solvation Models. Many reactions take place in solution Short-range effects Typically concentrated in the first solvation sphere Examples: H-bonds,
Force Field of Biological System 中国科学院理论物理研究所 张小虎 研究生院《分子建模与模拟导论》课堂 2009 年 10 月 21 日.
Molecular Modeling: Molecular Mechanics C372 Introduction to Cheminformatics II Kelsey Forsythe.
Ion Solvation Thermodynamics from Simulation with a Polarizable Force Field Gaurav Chopra 07 February 2005 CS 379 A Alan GrossfeildPengyu Ren Jay W. Ponder.
Chemistry 2 Lecture 10 Vibronic Spectroscopy. Learning outcomes from lecture 9 Excitations in the visible and ultraviolet correspond to excitations of.
Chem 388: Molecular Dynamics and Molecular Modeling Continuum Electrostatics And MM-PBSA.
Chemistry 6440 / 7440 Models for Solvation
SOLVENT EFFECTS ON IR MODES OF (R)-3-METHYLCYCLOPENTANONE CONFORMERS: A COMPUTATIONAL INVESTIGATION Watheq Al-Basheer Physics Department - King Fahd University.
Adam J. Fleisher David W. Pratt University of Pittsburgh Alessandro Cembran Jiali Gao University of Minnesota Charge redistribution in the β-naphthol-water.
Photoelectron Spectroscopy Lecture 3: vibrational/rotational structure –Vibrational selection rules –Franck-Condon Effect –Information on bonding –Ionization.
Dielectric constants of Biological Materials. 1. Review 2. Dielectric Mixtures 3. Characteristics of Some Biological Materials 4. 1.
Quantum decoherence of excited states of optically active biomolecules Ross McKenzie.
Lecture 3 – 4. October 2010 Molecular force field 1.
Electron transfer through proteins Myeong Lee (02/20/2006)
Jaguar in the Real World Used in national labs, industrial companies, and academic institutions worldwide Application areas include pharmaceutical, chemical,
Overview of Simulations of Quantum Systems Croucher ASI, Hong Kong, December Roberto Car, Princeton University.
Potential Energy Surfaces
Simulating the spectrum of the water dimer in the far infrared and visible Ross E. A. Kelly, Matt J. Barber, Jonathan Tennyson Department of Physics and.
Simulation of X-ray Absorption Near Edge Spectroscopy (XANES) of Molecules Luke Campbell Shaul Mukamel Daniel Healion Rajan Pandey.
VIBRATIONAL OVERTONE SPECTRA OF C 2 H 6 AND C 2 H 4 IN CRYOGENIC LIQUIDS Helena Diez-y-Riega and Carlos Manzanares Baylor University 2009.
Photochemistry Lecture 2 Fates of excited states of polyatomic molecules.
Nonlinear Optics Lab. Hanyang Univ. Chapter 3. Classical Theory of Absorption 3.1 Introduction Visible color of an object : Selective absorption, Scattering,
Time out—states and transitions Spectroscopy—transitions between energy states of a molecule excited by absorption or emission of a photon h =  E = E.
Density Functional Theory And Time Dependent Density Functional Theory
Vibrational and Rotational Spectroscopy
Objectives of this course
Solvatochromism and Photo-Induced Intramolecular Electron Transfer Katelyn J. Billings; Bret R. Findley 1 1 Department of Chemistry and Physics, Saint.
1 Li Xiao and Lichang Wang Department of Chemistry & Biochemistry Southern Illinois University Carbondale The Structure Effect of Pt Clusters on the Vibrational.
RamanRaman. Scattering Tyndall scattering – if small particles are present During Rayleigh scattering (interaction of light with relatively small molecules)
Slide 2/26 Schedule Lecture 1: Electronic absorption spectroscopy Jahn-Teller effect and the spectra of d 1, d 4, d 6 and d 9 ions Lecture 2: Interpreting.
Chem 1140; Molecular Modeling Molecular Mechanics Semiempirical QM Modeling CaCHE.
Effect of Aromatic Interactions on Flavin's Redox Potential: A Theoretical Study Michael A. North and Sudeep Bhattacharyya Department of Chemistry, University.
Modelling Metal Foam Formation in Helium Nanodroplets David McDonagh, The Centre for Interdisciplinary Science Project Supervisor: Professor Andrew Ellis,
1.Solvation Models and 2. Combined QM / MM Methods See review article on Solvation by Cramer and Truhlar: Chem. Rev. 99, (1999)
Electronic spectroscopy of Li(NH 3 ) 4 Nitika Bhalla, Luigi Varriale, Nicola Tonge and Andrew Ellis Department of Chemistry University of Leicester UK.
Ultrafast 2D Quantum Switching of p‑Electron Rotations
States and transitions
ROTATIONAL SPECTROSCOPY
SIMULATION OF THE SPIN-VIBRONIC STRUCTURE IN THE GROUND ELECTRONIC STATE AND EMISSION SPECTRA INTENSITIES FOR CH 3 O RADICAL VADIM L. STAKHURSKY Radiation.
MODULE 18(03) TRANSITIONS BETWEEN MOLECULAR STATES The total energy of a molecule is made up of several components E t = E e +E v +E r Where the subscripts.
Bonding & dynamics of CN-Rg and C 2 -Rg complexes Jiande Han, Udo Schnupf, Dana Philen Millard Alexander (U of Md)
Spectroscopy of d 6 Ru and Ir polypyridyl complexes for solar cells, OLED and NLO applications: Insights from theory Spectroscopy of d 6 Ru and Ir polypyridyl.
TURBOMOLE Lee woong jae.
Quantum Mechanics/ Molecular Mechanics (QM/MM) Todd J. Martinez.
OPTICAL PROPERTIES OF ADAMANTYL END-CAPPED POLYYNES: FROM EXPERIMENTS AND FIRST PRINCIPLES SIMULATIONS Daniele Fazzi Matteo Tommasini Andrea Lucotti Mirella.
Malgorzata Biczysko, Julien Bloino, Vincenzo Barone
Ch 10 Pages ; Lecture 24 – Introduction to Spectroscopy.
Development of Methods for Predicting Solvation and Separation of Energetic Materials in Supercritical Fluids Jason Thompson, Casey Kelly, Benjamin Lynch,
Development of a cavity ringdown spectrometer for measuring electronic states of Be clusters JACOB STEWART, MICHAEL SULLIVAN, MICHAEL HEAVEN DEPARTMENT.
Tao Peng and Robert J. Le Roy
Laser spectroscopy of a halocarbocation: CH 2 I + Chong Tao, Calvin Mukarakate, and Scott A. Reid Department of Chemistry, Marquette University 61 st International.
Lecture 36 Electronic spectroscopy. Electronic spectroscopy Transition energies between electronic states fall in the range of UV/vis photons. UV/vis.
Molecular aggregates Myounghee Lee.
A New Potential Energy Surface for N 2 O-He, and PIMC Simulations Probing Infrared Spectra and Superfluidity How precise need the PES and simulations be?
Raman Effect The Scattering of electromagnetic radiation by matter with a change of frequency.
Intramolecular charge transfer (ICT) in two phenylpyrrol derivatives: PP and PBN Two similar molecules but a different behavior Danielle Schweke Baumgertan.
Computational Chemistry:
Investigation of Solvation Effects on Optical Rotatory Dispersion Using the Polarizable Continuum Model ISMS Tal Aharon June 21st, 2017.
ANHARMONIC VIBRATIONAL SPECTROSCOPY FOR TRANSITION METAL COMPLEXES
From Electronic Structure Theory to Simulating Electronic Spectroscopy
1.
Julia Adolphs, Thomas Renger  Biophysical Journal 
Presentation transcript:

An effective method to study the excited state behaviour and to compute vibrationally resolved optical spectra of large molecules in solution 1 IBB/Consiglio Nazionale Ricerche 2 CR-INSTM Village 3 IPCF/Consiglio Nazionale Ricerche 4 Università Federico II Napoli Roberto Improta 1,2, Fabrizio Santoro 3, Alessandro Lami 3, Vincenzo Barone 2,4

Excited electronic states are involved in many phenomena/properties of potential technological interest Non linear optics Electron transfer Molecular electronics/Optoelectronics Conductivity Photophysics and photochemistry The study of the processes of charge, energy and excitatation transfer require the detailed knowledge of the static and dynamical behavior of the excited states

The understanding and the tailoring of the properties of a material often requires Knowledge of the Excited States of the building blocks Quantum mecanical calculations have always been very useful but…. A possible (handle with care) approach: Bottom-up Definition of suitable subsystems: building blocks

What is the interaction between the excited states of the building blocks? Materials of technological interest size Medium/large size molecule environment Condensed phase Small/medium size molecule Standard QM calculations Gas phase Rigid molecule at 0 K temperature vibrations vibrating molecule at finite temperature

DNA Bases as building blocks for photoactive materials Base stacking Base pairing isolated molecule In solution macromolecule in solution

Final goal describing the static and the dynamical behavior of the excited states of macromolecular systems in solution Where did we arrive, until now? 1)Solvent 2)Vibrations 3)Interactions between the building blocks

Our reference method for electronic calculations: Density Functional Theory (DFT) Time Dependent DFT (TD-DFT) hybrid functionals: PBE0 Best compromise between accuracy and computational cost Analytic gradients in solution are available: equilibrium geometry of the excited state in solution Properties: dipole, polarizability….

1.The solvent is an infinite, structureless medium characterised by macroscopic properties (dielectric constants, density, etc.) 1. Solvent effect Bulk Solvent effect: PCM model 2.A cavity is defined, such that the solvent distribution function is 0 inside the cavity and 1 outside. 4.The whole reaction field can be described in terms of an apparent charge density (  ) appearing on the cavity surface 3.The solute with its own electron density is inserted within the cavity

Gas Gas Phase+ Gas Phase+ PCM+ Phase 4 H 2 O PCM 4 H 2 O S1 4.77(0.00) 4.98(0.00) 5.14(0.00) 5.23(0.00) S2 5.24(0.14) 5.25(0.14) 5.19(0.19) 5.08(0.20) S3 6.06(0.03) 6.32(0.05) 6.29(0.12) 6.23(0.17) in eV, intensities in parentheses TD-PBE0/PCM calculations Experiment gas phase water The intensity of S2 and S3 increases with the polarity of the solvent In many cases only the inclusion of both explicit and bulk solvent effects can provide reliable estimates of the solvent shift. 1b. Solvent effect: hydrogen bonding effect J. Am. Chem. Soc. 2004, 126, J. Am. Chem. Soc. 2006, 128, J. Am. Chem. Soc. 2006, 128, solute Solute+ 1st solvation shell Solute+ 1st solvation shel + PCMl

1.c Solvent: Examples Discrepancy between the computed Vertical Excitation Energies and the Experimental band maxima in solution ≤ 0.25 eV TPP4S 2- water Exp.Band Max.* Q 1.94(0.25) 1.96(  0.1) B 2.95(1) 2.86(1) TPP4H 2+ CH 2 Cl 2 Q 1.94(0.27) 1.91(  0.18) B 2.96(1) 2.86(1) TPP2H benzene Qx 2.20(0.011) 1.91(  0.005) Qy 2.35(0.018) 2.25(  0.01) B 2.95(1) 2.96(1) Computed VEE*transition *relative intensity in parentheses

Absorption spectra including vibrational effect Franck-Condon integrals spectrum |e  |e′  Condon approximation · · Different methods for computing FC integrals are available….BUT 2. Vibrations

the number of vibrational states (and of the FC integrals to be computed) increases steeply with the dimension of the molecule and with the energy most of them do not contribute to the spectrum we devised a method to select the relevant contributions, building up a computational tool that is able to automatically compute converged spectra in large molecules without requiring manual and ad hoc choices of the user typical width of an absorption spectrum states; computationally unfeasible Coumarin C153 vibrational states the fortran code FCclasses is freely distributed upon request, see also the Village web-site 2. Vibrations

2b. Optical spectra in solution Coumarin C153 TD-DFT PCM/PBE0/6-31G(d) S1S1 S0S0 ΔE exp.-theor.  400 cm -1 Angew. Chemie (2007) 46, 405 Convolution with a gaussian for inhomogeneous broadening FWHM larger in the case of polar DMSO DMSOcyclohexane J. Chem. Phys. (2007) 126, Solvent effect on the energy and the shape of absorption spectra is computed with accuracy

Porphyrin (96 normal modes) ΔE exp.-theor.  1500 cm -1 cpu time=20 s Vibrationally Resolved Phophorescence Spectra 2b.Spectra in solution: larger molecules

exp. frequency (cm -1 ) C 60 Phosphorescence Spectrum 174 normal modes T 1 ( 3 T 2g )S0S0 Cautions: the optical transition is forbidden by symmetry and the spectrum should be computed in the Herzberg-Teller formalism Possibility for nonadiabatic couplings (Jahn-Teller distortions) theor. frequency (cm -1 ) ΔE exp.-theor.  400 cm -1 2b.Spectra in solution: larger molecules PBE0/6-31G(d)

2c. Spectra including the temperature effect 295 K 77 K ΔE exp.-theor.  2800 cm -1 Stilbene in cyclohexane PCM/PBE0/6-31+G(d,p) S1S1 S0S0 phenyl torsion 9 cm -1 S 0 45 cm -1 S 1 J. Chem. Phys. (2007) 126,

2d. Spectra including Herzberg-Teller effect shift~1700cm -1 Fluorescence Spectra of porphyrin

Adenine stacked oligomers 3. Interacting excited states Interaction between UV radiation and nucleic acids Potential nanotecnological interest

Computed absorption spectra in aqueous solution of different oligomers of 9-methyl-adenine Computations on systems (with size and in condition) comparable to those studied in the experiments 3. Interacting excited states

Calculations on a stacked dimer of 9-methyladenine When going from the monomer to the oligomer 1)Small blue shift of the band maximum 2)Small red shift of the low energy side 3)Decrease of the inteensity Calculations are able to reproduce the effect of stacking on the spectra Mutual arrangement frozen as in B-DNA 3. Interacting excited states Proc. Nat. Acad. Sci. U.S.A. (2007) in press

Conclusion Theor.Chem. Acc. (2007) 117, 1073 Reliable description of the excited state properties (transition moments, excite state dipole moments) in the gas phase and in solution Accurate computation of the energy, the geometry, and the vibrations of excited states in solution Computation of optical spectra of molecules of potential nanotechonological interest in realistic conditions (environment,temperature) First encouraging steps towards the study of the excited states of macromolecular systems

Perspectives Increasing the complexity of the system under study Providing the parameters for excitonic models Dynamical Simulations on macromolecules DFT and TD-DFT calculations as basis for Quantum Mechanical dynamical studies Integration with the results of other computational methods (CASSCF-CASPT2) NOW

Perspectives

Acknowledgements LSDM- Napoli N. Rega G. Morelli O. Crescenzi M. Pavone Gaussian M. Frisch G. Scalmani F. Santoro S. Lami IPCF-CNR Pisa V. Barone J. Bloino Federico II Napoli