1 Fastest Approach to Exact Pattern Matching Date:102/3/13 Publisher:Information and Emerging Technologies (ICIET), 2010 Information and Emerging Technologies.

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1 Fastest Approach to Exact Pattern Matching Date:102/3/13 Publisher:Information and Emerging Technologies (ICIET), 2010 Information and Emerging Technologies (ICIET), 2010 Author:Iftikhar Hussain, Imran Ali, Muhammad Zubair and Nazarat Bibi Presenter : Shi-qu Yu

2 The algorithm compares the pattern P with the substring of sequence T within a sliding window in the right-to-left order. The bad character rule and good suffix rule are used to determine the movement of sliding window. Boyer and Moore Algorithm

3 Bad Character Rule Suppose that P 1 is aligned to T s now, and we perform a pair-wise comparing between text T and pattern P from right to left. Assume that the first mismatch occurs when comparing T s+j-1 with P j. Since T s+j-1 ≠P j, we move the pattern P to the right such that the largest position c in the left of P j is equal to T s+j-1. We can shift the pattern at least (j-c) positions right. Pxyt Txt Pxyt s jm 1 c jm 1 Shift s +j -1

4 Rule 2-1: Character Matching Rule (A Special Version of Rule 2) Bad character rule uses Rule 2-1 (Character Matching Rule). For any character x in T, find the nearest x in P which is to the left of x in T.

5 Implication of Rule 2-1 Case 1. If there is a x in P to the left of T, move P so that the two x’s match.

6 Case 2: If no such a x exists in P, consider the partial window defined by x in T and the string to the left of it.

7 Good Suffix Rule 1 If a mismatch occurs in T s+j-1, we match T s+j-1 with P j’-m+j, where j’ (m-j+1 ≦ j’ < m) is the largest position such that (1) P j+1,m is a suffix of P 1,j’ (2) P j’-(m-j) ≠P j. We can move the window at least (m-j’) position(s). Pztyt Txt Pztyt s Shift s+j-1 jj’m1j’-m+j jj’m1j’-m+j z≠y

8 Rule 2: The Substring Matching Rule For any substring u in T, find a nearest u in P which is to the left of it. If such a u in P exists, move P; otherwise, we may define a new partial window.

9 Good Suffix Rule 2 If a mismatch occurs in T s+j-1, we match T s+m-j’ with P 1, where j’ (1 ≦ j’ ≦ m-j) is the largest position such that P 1,j’ is a suffix of P j+1,m. Txt Pt’yt s j’jm1 Shift s+j-1 s+m-j’ j’jm1 P.S. : t’ is suffix of substring t. Pt’yt Good Suffix Rule 2 is used only when Good Suffix Rule 1 can not be used. That is, t does not appear in P(1, j). Thus, t is unique in P.

10 Rule 3-1: Unique Substring Rule The substring u appears in P exactly once. If the substring u matches with T i,j, no matter whether a mismatch occurs in some position of P or not, we can slide the window by l. T: P: The string s is the longest prefix of P which equals to a suffix of u. s ss su ij l u u

Fastest-Bidirectional Case 1

FBD Case 2

FBD Case 3

FBD Case 4

12 comparisons in 5 attempts

RESULTS AND DISCUSSIONS