Ocean Biodiversity Information – 29/11-1/12/20041 European Register of Marine Species version 2.0 data management, current status and plans for the future.

Slides:



Advertisements
Similar presentations
UK-based developments in online thesauri for taxonomic information Copp, C., Grant, M., Hewzulla, D., Hussey, C., Robinson, J., van Breda, J. & White,
Advertisements

Landcare Research LCR Manage 7 of 25 Nationally Significant Collections & Databases –CHR (plants, mosses etc) - 600k collections –PDD (fungi) - 80k collections.
Beispielbild The EDIT Platform for Cybertaxonomy Anton Güntsch Freie Universität Berlin Botanic Garden and Botanical Museum Berlin-Dahlem.
International Research Cruise Database and Website Status October ‘07.
4D4Life Opening Meeting, September, Reading, UK The Global Multi-Hub Network in Concept Frank Bisby An EC Seventh Framework Scientific Data Infrastructures.
EDIT General Meeting Carvoeiro, January 2008.
Diana Hernandez Integrating the catalogue of Mexican biota: different approaches for different client perspectives.
Virtualizing Entomology Collection Student: Di Wang (Alan) Sponsors: John Marris: Curator, Entomology Research Museum Stuart Charters: Department of Applied.
Species 2000 & China - CODATA 25 Oct 06 Completing the Catalogue of Life: collaboration with megadiverse countries Frank Bisby, Sp2000 Secretariat University.
BGBM - Biodiversity Informatics04 June 2013 How the specimen data is organised and published at BGBM.
One Million Species in the Catalogue of Life – a triumph for Species 2000 and ITIS, or for TDWG standards? Frank Bisby Executive Director: Species 2000.
ChEssBase Online database for species from deep-water chemosynthetic ecosystems integrated with OBIS Eva Ramirez-Llodra & Maria Baker National Oceanography.
The Species 2000 Protocols for a Distributed System by Yuri Roskov, Species 2000 Secretariat 20th International CODATA Conference, Session K2, 25 October.
Building the European Register of Marine Species Richard White Biodiversity & Ecology Research Division, School of Biological.
The Visibility Information Exchange Web System is a database system and set of online tools originally designed to support the Regional Haze Rule enacted.
OpenUp! A New Project on Opening up the European Natural History Heritage for EUROPEANA W. G. Berendsohn, A. K. Michel, A. Güntsch, W.-H. Kusber (2011)
Ocean Biogeographic Information System Edward Vanden Berghe
16 months…. The Visibility Information Exchange Web System is a database system and set of online tools originally designed to support the Regional Haze.
FADA workshop, 5-7 December 2008 in Bruges (Belgium) World Register of Marine Species and Aphia IT platform Ward Appeltans
GLOBAL BIODIVERSITY INFORMATION FACILITY David Remsen ECAT Program Officer September G A Darwin-Core Archive solution to publishing and.
The EDIT Platform for Cybertaxonomy as an information broker in name infrastructures Andreas Kohlbecker 1, Yde de Jong 2, Cherian Mathew 1, Lorna Morris.
EAAP Working Group on AGR EAAP-WG-AGR Report on activities June 2005 to August th Workshop for European National Co-ordinators for the management.
PESI Pan-European Species-directories Infrastructure European GBIF nodes Meeting — Paris, 4 April 2011 Walter Berendsohn (based on presentation by Yde.
The Encyclopedia of Life: A Web Site for Every Species James Edwards Executive Director, EOL Barcode of Life Conference Taipei 20 September 2007.
Conserving Europe’s plant genetic resources for use now and in the future PGR Forum European crop wild relative diversity assessment and conservation forum.
Indexing the Species Names of the World - for the World Frank Bisby (Species 2000), Michael Ruggiero (ITIS) Per de Place Bjørn (GBIF - ECAT)
Hue University Rotifer Taxonomy workshop 6-12 March 2010 Global internet resources for taxonomists Hendrik S EGERS Belgian Biodiversity Platform Royal.
1 Union of International Associations (UIA) Brussels East-West Collaboration in the Development of Interactive Media Products (Hungary,
TDWG Conference, Jönköping 2014 Florian Tobias Wetzel 1, Yde de Jong 2, Falko Glöckler 1, Günther Korb 1, Alexander Kroupa 1, Anke Hoffmann 1, Anton Güntsch.
Representing taxonomy MarBEF-IODE workshop Oostende, March 2007.
TDWG Montpellier France 09-13th November Using the CDM to build Europe’s largest species database Marc Geoffroy, Anton Güntsch, Andreas Kohlbecker.
Online Data Flanders Marine Data & Information Centre InnovOcean site SeadataNet Annual Meeting, Madrid 2009.
A taxonomic and biogeographic information system of marine species in the Southern North Sea developed by Flanders Marine Institute Ward Appeltans, Edward.
Ocean Biodiversity Informatics conference Hamburg, 29/11-1/12/2004 Ocean Biodiversity Informatics International Conference on Marine Biodiversity Data.
A Biodiversity Content Management System for Research, Education, and Outreach Cynthia Sims Parr University of Maryland, College Park Co-authors Roger.
A curation interface for reconciliation of species names for India. Thomas Vattakaven and R. Prabhakar, India Biodiversity Portal, Strand Life Sciences,
Monitoring public satisfaction through user satisfaction surveys Committee for the Coordination of Statistical Activities Helsinki 6-7 May 2010 Steve.
Project Leaders Derek TittensorDerek Tittensor Edward Vanden BergheEdward Vanden Berghe Pat HalpinPat Halpin Boris WormBoris Worm Numerous other importantNumerous.
Ingunn Selvik Norwegian Pollution Control Authority.
Isabel Calabuig Lotte Endsleff 1 NODES regional MEETING Europe Digitarium,
GBIF Poland *** Current Status Piotr Tykarski University of Warsaw Polish GBIF Node EU GBIF NODES Meeting, Paris, 5.IV.2011.
NeMys: an evolving biological information system, a state of art Deprez, Tim (UGent) Vincx, Magda (UGent) Vanden Berghe, Edward (VLIZ) Mees, Jan (VLIZ)
CBD CoP9 GTI Side Event 22/5/2008. CBD CoP9 GTI Side Event 22/5/2008 The European Distributed Institute of Taxonomy: Assessing and building taxonomic.
BiodiversityWorld GRID Workshop NeSC, Edinburgh – 30 June and 1 July 2005 Taxonomic verification: Species 2000 and the Catalogue of Life Frank Bisby.
Using REDCap (Research Electronic Data Capture) as a tool to perform research studies Abstract ID no. IRIA-1076.
28/06/06 Kickoff Meeting WP2 Integrating and Reshaping the Expert and Expertise Basis WP leader NHMD - UKBH (Henrik Enghoff)
European Network for Biodiversity Information. Why ENBI ?
Fábio Lang da Silveira – This talk on behalf of OBIS International Committee and OBIS North & South America Nodes USP – Zoology.
Hellenic Centre for Marine Research (HCMR) MedOBIS - Ocean Biogeographic Information System for the Eastern Mediterranean and Black Sea.
NCP training session 30 October 2002 Integrated information system on RTD in Europe Gwenda Jeffreys-Jones, DG RTD European Commission.
Extending the biogeographical model Africamuseum 6 (7?) June 2013.
Networking Biodiversity Data – Online Access to Distributed Data Sources in GBIF-D Andrea Hahn, A. Kirchhoff & W.G. Berendsohn Botanic Garden and Botanical.
Integration and Reshaping of the Infrastructure Basis Work Package 3 Wouter Los & WP3 collaborators.
1 EMODNET pilot biological lot Francisco Hernandez, Simon Claus, Leen Vandepitte.
Dissemination of SBS data and technical visits to MSs item 10 of the agenda Structural Business Statistics Working Group 14 April 2015, Luxembourg.
GBIF - ECAT  Electronic Catalogue of Names of Known Organisms  Program Officer;  Per de Place Bjørn 
Centre for Environmental Data and Recording - CEDaR Established in 1995 to collect, collate and disseminate all biodiversity and geodiversity records for.
1 Mette Lund & Paco Sánchez Biodiversity group Eionet Biodiversity NRC 5-7 Nov 2012 EUNIS web application.
African Register of Marine Species AfReMas Leen Vandepitte On behalf of WoRMS data management team.
Quality control of biodiversity data: tools & techniques Leen Vandepitte On behalf of WoRMS, EurOBIS & LifeWatch data management teams.
Leen Vandepitte On behalf of WoRMS data management team Introduction to WoRMS, the World Register of Marine Species.
Coordination and Policy Development in Preparation for a European Open Biodiversity Knowledge Management System Supported by the European Commission through.
The IPT user interface and data quality tools
Flanders Marine Institute (VLIZ)
Introduction to WoRMS, the World Register of Marine Species.
Daphnis De Pooter on behalf of the WoRMS data management team
EC FP7 - Cooperation Theme 6: Environment (incl. climate change)
Consortium of European Taxonomic Facilities
March 2014, Oostende, Belgium
The New Biogeographic Process General info – December 2011
Presentation transcript:

Ocean Biodiversity Information – 29/11-1/12/20041 European Register of Marine Species version 2.0 data management, current status and plans for the future Edward Vanden Berghe, Philippe Bouchet, Geoff Boxshall, Mark Costello, Chris Emblow

Ocean Biodiversity Information – 29/11-1/12/20042 ERMS overview European Register of Marine Species Result of EU project, 10 partners Managed by SMEBD Will form taxonomic backbone of EurOBIS and MarBEF data management Will be updated

Ocean Biodiversity Information – 29/11-1/12/20043 ERMS v 1.0 EU project (MAST) 2 years: contractual partners responsible for data management, promotion of the product, dialogue with end users… 100+ editors of taxonomic lists not necessarily from the partner institutions responsible for the content

Ocean Biodiversity Information – 29/11-1/12/20044 ERMS v 1.0 content List of names Synonymy for some groups Very limited distribution information level of major sea area (Atlantic, Mediterranean,…) very incomplete

Ocean Biodiversity Information – 29/11-1/12/20045 ERMS geographic scope

Ocean Biodiversity Information – 29/11-1/12/20046 ERMS taxonomic scope Multicellular organisms Animals, plants, macroorganisms Protoctista not part of the original plan Gaps exist

Ocean Biodiversity Information – 29/11-1/12/20047 ERMS statistics all taxa species valid Biota Animalia Mollusca Platyhelm Arthropoda Fungi Plantae Protoctista

Ocean Biodiversity Information – 29/11-1/12/20048 ERMS v 1.0 availability

Ocean Biodiversity Information – 29/11-1/12/20049 ERMS v 1.0 weaknesses Taxonomic gaps Set of excel sheets, no proper database Checklists, some created from scratch, some compilations of existing regional lists No hierarchy Detail available varies across checklists distribution info, synonymy, literature… No integration between checklists Programme-based, no continuation

Ocean Biodiversity Information – 29/11-1/12/ SMEBD Society for the Management of European Biodiversity Data All data contributors are members of the society Society manages intellectual property right on behalf of authors ERMS authors, discussions to include also Fauna Europaea authors

Ocean Biodiversity Information – 29/11-1/12/ MarBEF Marine Biodiversity and Ecosystem Functioning EU FP 6 ‘Network of Excellence’ VLIZ does data management Needed taxonomic authority list for integration of databases EurOBIS SMEBD gave mandate to VLIZ/MarBEF to manage data

Ocean Biodiversity Information – 29/11-1/12/ ERMS v 1.1 Integrating spreadsheets in one relational database MS SQL Server, front end Access Structure is open hierarchy (± ITIS) Content remains same as ERMS 1.0 some inconsistencies removed But adding taxonomic hierarchy

Ocean Biodiversity Information – 29/11-1/12/ ERMS v 1.1 structure

Ocean Biodiversity Information – 29/11-1/12/ ERMS v 1.1 availability

Ocean Biodiversity Information – 29/11-1/12/ ERMS v 2.0 Content will be updated through web interface snapshot frozen and archived at regular intervals Structure revised to allow audit trail who did what, when Taxon editors have been invited Extra information (not strictly ERMS) Feeding types, distribution info (country), trophic level, biomass…

Ocean Biodiversity Information – 29/11-1/12/ ERMS v 2.0 editorial structure ERMS Editorial committee Arvanitides, Bouchet, Boxshall, Costello (chair), Emblow, Vanden Berghe (db) responsible for management Associate editors (‘Group coordinators’ of FE) responsible for part of taxonomic tree have edit rights through web site Review editors (‘Validation’ of FE) assist associate editors

Ocean Biodiversity Information – 29/11-1/12/ ERMS v 2.0 db structure

Ocean Biodiversity Information – 29/11-1/12/ ERMS future Species 2000 Europa member ‘EuroHub’ for Species 2000, together with Fauna Europaea and Euro+Med PlantBase Through dynamic link distributed system Spice protocol developed under Species 2000 Europa possible alternatives are DiGIR and BioCASe Contribution to global systems ITIS URMO