PI of TAIR, The Arabidopsis Information Resource Carnegie Institution for Science, located at Stanford, California Background.

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Presentation transcript:

PI of TAIR, The Arabidopsis Information Resource Carnegie Institution for Science, located at Stanford, California Background – genetics and developmental biology of Arabidopsis Me:

Plant Working Group Great variety of needs and approaches – Ecology – Systematics – Genetics/genomics Great variety of species of interest – ‘Model ‘ plants for genetic approaches – Crop plants – Models for ecological studies – Plants of evolutionary interest – Models for population biology Great enthusiasm!

Plant Working Group - Resources Ontologies High throughput phenotyping projects Other Projects – Coordination – Resource development

Plant Resources - Ontologies Plant Ontology Crop Ontology Trait Ontology OBOE / Plant Functional Trait Ontology many others…

Plant Resources – HTP Phenotyping Jülich Plant Phenotyping Center (Germany) Australian Plant Phenomics Facility AGRON-OMICS (Europe) Phenoscope (France)

Plant Resources – Other projects TraitNet (RCN) International Plant Phenomics Network iPlant Genotype to Phenotype (iPG2P) Gigavision (Justin Borevitz, Chicago) Gigavision

Plant Working Group – Questions Large and diverse group of researchers with lots of active projects – Should we aim for one plant ontology? interoperability? common data formats? – What tools and methods need to be developed? – How much can we share the work of developing them?