By: C.J. Beneduce Maria Guirguis Amanda Rode Mr. Normand Dubois.

Slides:



Advertisements
Similar presentations
Big Idea #1 “ Atoms, Elements and the Building Blocks of Matter” Basic concepts covered: Chemical elements are fundamental building blocks of matter. Matter.
Advertisements

Gel electrophoresis The gel electrophoresis method was developed in the late 1960's. It is a fundamental tool for DNA sequencing.
Energy in a Reaction. Reaction Rates Depend On: 1.Rate of collisions (More collisions = faster rxn) 2.Effectiveness of collisions (angle of collisions)
Cloning Worksheet Winter 2011 Producing a Standard Curve to Determine DNA Fragment Sizes.
1% Agarose Gel DNA Electrophoresis Running time : 52 minutes Distance measured from the well to the top of the second band: 4,5 cm Running voltage: 100.
Spectrophotometers Nucleic Acids and Proteins. Nucleic Acids and Spectrophotometer The rings of the bases (A, C, G, T, U) are made up of alternating single.
Intercalation of DNA by Ruthenium(II) Pteridinyl Complexes Shannon R. Dalton, Samantha Glazier, Alanna Albano, Courtney Megatulski & Sharon J. Nieter Burgmayer*
DNA Structure and Analysis
(2-Hydroxyethyl) Triphenylphosphonium Chloride Large Molecule/Small Molecule Interactions Rhode Island College July 14-18, 2008 Bailey Sarber, Samantha.
T ETRAPHENYLPHOSPHONIUM B ROMIDE (TPP) L ARGE M OLECULE ~S MALL M OLECULE I NTERACTIONS Pilgrim High School Mr. Dubois, Mr. Lobdell C.J. Beneduce, Bryan.
Large Molecule ~ Small Molecule Interactions Projects By the Woonsocket Team: Toni DiMarzio Andrea Harnois Alyshia Johnson Claire Laquerre.
SHEA HIGH SCHOOL July 13-17, 2009 Ms. La Roche Cesar Luzon, Janice Miranda, Maldine Santos, Estefania Tabares.
Triphenyl (2-pyridylmethyl) Phosphonium Chloride Large Molecule – Small Molecule Interactions Rhode Island College July 13 – 17, 2009.
South Kingstown High School Kenny Chappell Trevor Hosley Catherine Jones Andrew Sharkey Stephen Vincelette.
Large Molecule ~ Small Molecule Interactions Project Times Squared Academy Sorys E. Cepeda Jeffrey Doddio Instructor: Kerri Krawczyk.
JOINT PROJECT WITH RHODE ISLAND COLLEGE DEPARTMENT OF PHYSICAL SCIENCES JULY , 2009 Interaction of o-Xylylenebis (triphenylphosphonium bromide) and.
DNA & RNA Structure Fig 1.9. Deoxyribonucleic acid (DNA) is the genetic material -Stores genetic information in the form of a code: a linear sequence.
Rates of Reactions Mr. Skirbst Physical Science Topic 18.
4-2 Make a function table and a graph for the function y = –9x2. Is the function linear or nonlinear? Step 1 Make a function table using the rule y =
Restriction Mapping of Plasmid DNA. Restriction Maps Restriction enzymes can be used to construct maps of plasmid DNA Restriction enzymes can be used.
Big Idea 3 – Investigation (Lab) 9 We did a variation of this lab at the Cold Spring Harbor DNA Learning Center West… The next few slides highlight the.
Gel Electrophoresis based on motion of charged molecules in an electric field toward the opposite charge. Agarose gels (for larger fragments of DNA) or.
Gel Electrophoresis.
Lab.8 8RBs0Ghg_48
Jeopardy Misc. PV92 and more pGLO and more More
The use of absorption spectroscopy UV/VIS  Concentration measurements.  Assay of chemical reactions.  Identification of substances.
Topic 6 Kinetics Rates of reaction Collision theory.
Absorption Spectra of Nano-particles
5.8 Graphing Absolute Value Functions
Heat Problems There are a few problems that deal with heat: There are a few problems that deal with heat: –Heat as enthalpy –Specific heat –Heat of fusion.
Microplate reader spectrophotometer. The Beer-Lambert Law A=abc Now let us look at the Beer-Lambert law and explore it's significance. A is absorbance.
FINDING THE SLOPE FROM 2 POINTS Day 91. Learning Target: Students can find the slope of a line from 2 given points.
  Examining how much light is absorbed by a compound’s sample at various wavelengths  Spectrum peaks—  Indicates the wavelengths associated with electrons’
Infrared Spectroscopy
Introduction to Spectrophotometry & Beer’s Law
Experiment 33 Colorimetric Determination of Iron CHE1181.
M. Pickens 2006 Slope. M. Pickens Rate of Change & Slope To learn what slope is To learn what a line looks like when it has positive, negative,
A 2 nd year college student working in the lab for the summer forgot to label the Tube of plasmid DNA that he/she was given. So being the brilliant graduate.
Biochemist’s View of the DNA Double Helix Major groove Minor groove.
ATOM AND EVE MOLES AND STOICH CHEMICAL REACTIONS SOLUTIONS.
Algebra 1 Section 7.6 Solve systems of linear inequalities The solution to a system of linear inequalities in two variable is a set of ordered pairs making.
Absorption spectrum and spectrophotometric determination of concentration Experiment 1.
Algebra 1 Section 4.2 Graph linear equation using tables The solution to an equation in two variables is a set of ordered pairs that makes it true. Is.
Agarose Gel Electrophoresis
Restriction Enzyme Digestion of Phage DNA
Lab.8
Small Molecule Large Molecule Interactions
Objective – To use tables to represent functions.
Does TPEOB Interact with DNA?
α-Triphenylphosphonium-p-toluic acid bromide
Infrared Spectroscopy
DATA ANALYSIS.
“CTP” cinnamyltriphenylphosphonium chloride
© 2013 Elsevier, Inc. All rights reserved.
© 2013 Elsevier, Inc. All rights reserved.
Spectral Characterization
Agarose gel Electrophoresis
Single Monochrome Real-Time RT-PCR Assay for Identification, Quantification, and Breakpoint Cluster Region Determination of t(9;22) Transcripts  Marina.
Graphing Techniques.
Chapter Ten: Chemical Reactions
Slope  4 Ways: Graph Formula Ordered Pairs Table.
Products seen by gel electrophoresis following two rounds of the multiplex herpesvirus PCR. The material in lanes 1–15 was derived from genital swabs.
Heating and Cooling Curves
NikR Repressor Chemistry & Biology
Solutions of Linear Functions
Chemical Reactions Table of Contents
Matter and Change. Matter and Change Chapter Ten: Chemical Reactions 10.1 Understanding Chemical Reactions 10.2 Energy and Chemical Reactions.
Physical and Chemical Changes
Gradients L.O. All pupils can find the gradient of linear graphs
5.1 Rate of Change and Slope
Presentation transcript:

By: C.J. Beneduce Maria Guirguis Amanda Rode Mr. Normand Dubois

[Cyanomethyltriphenylphosphonium] + Bromide- (CMTPPB) Chemical Formula: C 20 H 17 BrNP Molecular Weight: Melting Point: 279 C o

CMTPB and DNA Minor Groove Energy= kcal/mol Gradient= Major Groove Energy= kcal/mol Gradient= CMTPPB located is the minor groove of a 12 base pair DNA CMTPPB interacting with a 4 base pair DNA. Energy= kcal/mol Gradient=

Cary Spectrophotometer Data Tables DNA Temperature (C o )Absorbance DNA and CMTPPB Temperature (C o) Absorbance

Cary Spectrophotometer Graphs

Electrophoresis From left to right: linearized DNA(E), linearized DNA and CMTPPB(EB), plasmid DNA(X), plasmid DNA and CMTPPB(XB), and ladder (L). Trail 1 E- Band #1= 25cm EB- Band #1= 25cm X- Band #1= 22cm Band #2= 24cm Band #3= 28cm XB- Band #1= 21cm Band #2= 29cm L- Band #1= 16cm Band #2= 20cm Band #3= 23cm Band #4= 28cm

Discussion The results indicated that CMTPPB may have bound with the DNA. The evidence for this was: A negative energy on HyperChem On the Cary Spectrophotometer, there was a shift in the melting curve of the DNA and CMTPPB sample, compared to the native DNA sample For future investigations: More trials Different concentrations of the compound of interest