Tissue Slice Preparation Electrochemical Biosensor Development Microchip Development Fluorescence Video Microscopy Optical Image Chemical Image Composite.

Slides:

Advertisements

Similar presentations

In-Class Case Study: Determining the Mechanical Properties of Bone Using State-of-the-art Mechanical Testing System (MTS Bionix) Prepared by Prof. Deepak.

Advertisements

STEVE BENOIT DEPARTMENT OF MATHEMATICS COLORADO STATE UNIVERSITY Models of cell dynamics and intercellular communication.

Examples of Universal Systems Models This material is based upon work supported by the National Science Foundation under Grant No Any opinions,

NSF GK-12 Educational Activities and Future Directions This program is based upon collaborative work supported by a National Science Foundation Grant No.

Copyright J. Paul Robinson, Steve Kelley Purdue University Cytometry Laboratories of 29 Slides BMS “Introduction to Confocal Microscopy.

Copyright J. Paul Robinson, Steve Kelley Purdue University Cytometry Laboratories of 29 Slides BMS “Introduction to Confocal Microscopy.

An Automated Method for Analysis of Flow Characteristics of Circulating Particles from In-Vivo Video Microscopy IEEE – Transactions on Medical Imaging,

P11001:Balance Training Bike This project was originally begun winter quarter of It was revisited winter quarter of This was designed to help.

Introduction to Biomedical Image Analysis BMI 705 Winter 2009 Kun Huang Department of Biomedical Informatics Ohio State University.

DNA NANOTECHNOLOGY. Outline DNA in nature DNA and nanotechnology Extract real DNA.

Duke University, Fitzpatrick Institute for Photonics BIOS Lab, Department of Biomedical Engineering Two-wavelength unwrapping for transmission-geometry.

This material is based upon work supported by the U.S. Department of Homeland Security, Science and Technology Directorate, Office of University Programs,

Program will begin shortly… “Inner Life of the Cell”, Harvard University © 2008 Up Next … Making Molecular Movies with Up Next … Making Molecular Movies.

Explorer of Taxon Concepts (ETC) From description to matrix and beyond in a web-based toolbox.

Engineering Design By Brian Nettleton This material is based upon work supported by the National Science Foundation under Grant No Any opinions,

 In electrical engineering and computer science image processing is any form of signal processing for which the input is an image, such as a photograph.

Equations Speckle contrast : K(T) = σ s / Decay rate of autocorrelation: g(T) = / Critical decay time: τ 0 = g(e -1 sec) Relative velocity:v = x/ τ 0 Algorithms.

Miriam Israelowitz 1 and Dr. David L. Wilson 2 1 Department of Physics, Case Western Reserve University, Cleveland OH, 2 Deparment of Biomedical Engineering,

Applying Open Source to Open Science Ray Idaszak Director, Collaborative Environments RENCI, University of North Carolina at Chapel Hill.

Data Management for Large STEP Projects Michigan State University & Lansing Community College NSF STEP PI Meeting March 15, 2012 Workshop Session I-08.

Communicating a Design Proposal By Brian Nettleton This material is based upon work supported by the National Science Foundation under Grant No

Fluorescence Fluctuation Spectroscopy – A tool for the detection of nanometer sized particles in living cells Michael Edetsberger Max F. Perutz Laboratories,

MILLIONAIRE SCOREBOARD $100 $200 $300 $500 $1,000 $2,000 $4,000 $8,000 $16,000 $32,000 $64,000 $125,000 $250,000 $500,000 $1 MILLION Click the $ for.

Venugopalan Lab Photons and Transport

Image Processing Jitendra Malik. Different kinds of images Radiance images, where a pixel value corresponds to the radiance from some point in the scene.

Computer Aided Design By Brian Nettleton This material is based upon work supported by the National Science Foundation under Grant No Any opinions,

Research Computing Archived Presentation Title:Indiana Economic Development From Indiana Economic Development Corporation to Indiana and Purdue.

Lesson Title: Guidelines for Securing RFID Systems Dale R. Thompson Computer Science and Computer Engineering Dept. University of Arkansas

IDigBio is funded by a grant from the National Science Foundation’s Advancing Digitization of Biodiversity Collections Program (Cooperative Agreement EF ).

A radiologist analyzes an X-ray image, and writes his observations on papers  Image Tagging improves the quality, consistency.  Usefulness of the data.

How can microscopic techniques be improved for longitudinal study of engineered tissues and model organisms? Kirsten Brink; Klein Forest High School-Klein.

Backwards Design STEP 1: Agree on the overarching science concept of the 5E sequence STEP 2: Design the Evaluate and decide what evidence students will.

Updated September 2011 Medical Applications in Nanotechnology Nano Gold Sensors Lab.

RESEARCH POSTER PRESENTATION DESIGN © QUICK TIPS (--THIS SECTION DOES NOT PRINT--) This PowerPoint template requires basic.

Motion Detection and Processing Performance Analysis Thomas Eggers, Mark Rosenberg Department of Electrical and Systems Engineering Abstract Histograms.

SHINE: S eattle’s H ub for I ndustry-driven N anotechnology E ducation North Seattle College Train the NanoTeacher Workshop July 16, 2014 Lithography 1.

Summary of National Fish and Wildlife Foundation Grants to the FMA February 25, 2013.

Motion Detection Frame 1Frame 2 Anomalous activity.

Prototyping Brian Nettleton This material is based upon work supported by the National Science Foundation under Grant No Any opinions, findings.

 Wind Power TEAK – Traveling Engineering Activity Kits Partial support for the TEAK Project was provided by the National Science Foundation's Course,

Lesson Title: Animal Identification Standards Dale R. Thompson Computer Science and Computer Engineering Dept. University of Arkansas

Enhanced Presentation of Tomographic Data Carmen Watts Clayton 1, Bernice Mills 2, George Buffleben 2, Thien Vu-Nguyen 3 1 STAR, California State University.

Data Mining Data Fusion Kathy Chiang Upstate 2010

Engineering programs must demonstrate that their graduates have the following: Accreditation Board for Engineering and Technology (ABET) ETP 2005.

Does Laboratory Technology Facilitate Students’ Learning In Biology Courses? Ekaterina Zagriadskaia, Ali Ahrabi, Alena Chekmasova, Paloma Valverde Department.

The Work of the Milwaukee Mathematics Partnership DeAnn Huinker Kevin McLeod UW-Milwaukee Ningbo University (China) Delegation Higher Education Workshop.

IMAGE PROCESSING is the use of computer algorithms to perform image process on digital images   It is used for filtering the image and editing the digital.

Engineering and Education Partnership: Preparing the Next Generation of Cross Disciplinary Trained STEM Teachers Dr. Michael de Miranda School of Education.

The Binary Number System

Applying Open Source to Open Science

Jason Chiang Department of Electrical and Computer Engineering

Discussion and Conclusion

UMass Lowell Dept. of Computer Science Graduate School of Education

Guest lecturer: Isabel K. Darcy

Adaptive Lessons for Pre-Class Preparation for a Flipped Classroom

ENGINEERS DO MANY THINGS. ENGINEERS DO MANY THINGS.

Critical - thinking Assessment Test (CAT)

Guest lecturer: Isabel K. Darcy

Motion to award Degrees

Title of Poster Site Visit 2017 Introduction Results

People Who Did the Study Universities they are affiliated with

Title of session For Event Plus Presenters 12/5/2018.

ارائه دهنده: محمود امین طوسی

Results and Discussion

Adaptive Lessons for Pre-Class Preparation for a Flipped Classroom

Numerical Methods Newton’s Method for One -Dimensional Optimization - Example

Your Project Title Here…

Title of Poster Site Visit 2018 Introduction Results

This material is based upon work supported by the National Science Foundation under Grant #XXXXXX. Any opinions, findings, and conclusions or recommendations.

Project Title: I. Research Overview and Outcome

Presentation transcript:

Tissue Slice Preparation Electrochemical Biosensor Development Microchip Development Fluorescence Video Microscopy Optical Image Chemical Image Composite Image Analysis Data Acquisition & Processing Microchip Biosensor Array Tissue Sample Biomedical Sciences Chemistry Electrical & Computer Engineering Computer Science Mathematics This program is based upon collaborative work supported by a National Science Foundation Grant No ; Colorado State University, Thomas Chen, Principal Investigator, Michael A. de Miranda and Stuart Tobet Co-Principal Investigators. Any opinions, findings, conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. C OLORADO H IGH - SCHOOL I NTERDISCIPLINARY P ROJECT Dec. 7, 2010

Metamorph (Commercial software) Raw TIF Image Files Analysis Tool (CSU Software) An array of analyzed images, spreadsheets, and data files… ANALYSES: Frame extraction Brightness/contrast Noise filtering Motion compensation Cell identification Trajectory extraction Trajectory analysis

Metamorph Raw TIF Image Files

Analysis Tool (CSU Software) ANALYSES: Frame extraction Brightness/contrast Noise filtering Motion compensation Cell identification Trajectory extraction Trajectory analysis Raw TIF Image File (Time = t) Raw Frame (Time = t, z = 0) Raw Frame (Time = t, z = 1) Raw Frame (Time = t, z = 2) Raw Frame (TIF) (Time = t) MERGE

Analysis Tool (CSU Software) ANALYSES: Frame extraction Brightness/contrast Noise filtering Motion compensation Cell identification Trajectory extraction Trajectory analysis Equalized (PNG) (Time = t) Raw Frame (TIF) (Time = t) Movie (MOV) Original brightnessAdjusted brightness

Analysis Tool (CSU Software) ANALYSES: Frame extraction Brightness/contrast Noise filtering Motion compensation Cell identification Trajectory extraction Trajectory analysis Smoothed (PNG) (Time = t) Equalized (PNG) (Time = t) Movie (MOV)

Analysis Tool (CSU Software) ANALYSES: Frame extraction Brightness/contrast Noise filtering Motion compensation Cell identification Trajectory extraction Trajectory analysis Stabilized (PNG) (Time = t) Smoothed (PNG) (Time = t) Movie (MOV) GOAL: Stabilize the center of the frame…

Analysis Tool (CSU Software) ANALYSES: Frame extraction Brightness/contrast Noise filtering Motion compensation Cell identification Trajectory extraction Trajectory analysis Cells (PNG) (Time = t) Stabilized (PNG) (Time = t) Movie (MOV) Cell Positions Cell Vectors Tissue Vectors (CSV - Excel)

Analysis Tool (CSU Software) ANALYSES: Frame extraction Brightness/contrast Noise filtering Motion compensation Cell identification Trajectory extraction Trajectory analysis Trajectories (PNG) (Time = t) Cells (PNG) (Time = t) Movie (MOV) Trajectory Data (CSV - Excel) Raw Data (DAT files)

Analysis Tool (CSU Software) ANALYSES: Frame extraction Brightness/contrast Noise filtering Motion compensation Cell identification Trajectory extraction Trajectory analysis Raw Data (DAT files) Report & Summary (CSV - Excel) Diffusion Curve FitsVisual AnalysesRegion detection

Acknowledgements: CSU Biomedical Sciences Dept and the Tobet Lab: S. Tobet, M. Stratton, K. Frahm and B. Searcy CSU Department of Mathematics V. Putkaradze University of Ljubljana & Jožef Stefan Institute P. Ziherl The author would like to thank the National Science Foundation for support under Grant No