The Closure Principle Revisited Dror Rom Prosoft Clinical IMPACT Symposium November 20, 2014 Contributions by Chen Chen.

Slides:



Advertisements
Similar presentations
C82MST Statistical Methods 2 - Lecture 5 1 Overview of Lecture Testing the Null Hypothesis Statistical Power On What Does Power Depend? Measures of Effect.
Advertisements

A new group-sequential phase II/III clinical trial design Nigel Stallard and Tim Friede Warwick Medical School, University of Warwick, UK
1 An Overview of Multiple Testing Procedures for Categorical Data Joe Heyse IMPACT Conference November 20, 2014.
Statistical Significance What is Statistical Significance? What is Statistical Significance? How Do We Know Whether a Result is Statistically Significant?
The Multiple Regression Model Prepared by Vera Tabakova, East Carolina University.
HYPOTHESIS TESTING Four Steps Statistical Significance Outcomes Sampling Distributions.
The Normal Distribution. n = 20,290  =  = Population.
Hypothesis Testing Steps of a Statistical Significance Test. 1. Assumptions Type of data, form of population, method of sampling, sample size.
Differentially expressed genes
Statistical Significance What is Statistical Significance? How Do We Know Whether a Result is Statistically Significant? How Do We Know Whether a Result.
UNDERSTANDING RESEARCH RESULTS: STATISTICAL INFERENCE.
Lecture 14 – Thurs, Oct 23 Multiple Comparisons (Sections 6.3, 6.4). Next time: Simple linear regression (Sections )
Comparing Means.
Significance Tests P-values and Q-values. Outline Statistical significance in multiple testing Statistical significance in multiple testing Empirical.
8-5 Testing a Claim About a Standard Deviation or Variance This section introduces methods for testing a claim made about a population standard deviation.
Chapter 9 Hypothesis Testing.
BCOR 1020 Business Statistics Lecture 20 – April 3, 2008.
Statistics for Microarrays
5-3 Inference on the Means of Two Populations, Variances Unknown
Multiple Testing Procedures Examples and Software Implementation.
Chi-square Goodness of Fit Test
Hypothesis Testing and T-Tests. Hypothesis Tests Related to Differences Copyright © 2009 Pearson Education, Inc. Chapter Tests of Differences One.
Leedy and Ormrod Ch. 11 Gray Ch. 14
Chapter 12: Analysis of Variance
AM Recitation 2/10/11.
Multiple Testing in the Survival Analysis of Microarray Data
Hypothesis Testing.
1/2555 สมศักดิ์ ศิวดำรงพงศ์
1 Tests with two+ groups We have examined tests of means for a single group, and for a difference if we have a matched sample (as in husbands and wives)
T-distribution & comparison of means Z as test statistic Use a Z-statistic only if you know the population standard deviation (σ). Z-statistic converts.
Regression Part II One-factor ANOVA Another dummy variable coding scheme Contrasts Multiple comparisons Interactions.
Education Research 250:205 Writing Chapter 3. Objectives Subjects Instrumentation Procedures Experimental Design Statistical Analysis  Displaying data.
Two Variable Statistics
ANOVA (Analysis of Variance) by Aziza Munir
Random Regressors and Moment Based Estimation Prepared by Vera Tabakova, East Carolina University.
Between-Groups ANOVA Chapter 12. >When to use an F distribution Working with more than two samples >ANOVA Used with two or more nominal independent variables.
Chapter 10: Analyzing Experimental Data Inferential statistics are used to determine whether the independent variable had an effect on the dependent variance.
I. Statistical Tests: A Repetive Review A.Why do we use them? Namely: we need to make inferences from incomplete information or uncertainty þBut we want.
Lesson Multiple Regression Models. Objectives Obtain the correlation matrix Use technology to find a multiple regression equation Interpret the.
Statistical Hypotheses & Hypothesis Testing. Statistical Hypotheses There are two types of statistical hypotheses. Null Hypothesis The null hypothesis,
Back to basics – Probability, Conditional Probability and Independence Probability of an outcome in an experiment is the proportion of times that.
Testing Hypothesis That Data Fit a Given Probability Distribution Problem: We have a sample of size n. Determine if the data fits a probability distribution.
FPP 28 Chi-square test. More types of inference for nominal variables Nominal data is categorical with more than two categories Compare observed frequencies.
HYPOTHESIS TESTING FOR VARIANCE AND STANDARD DEVIATION Section 7.5.
METHODS IN BEHAVIORAL RESEARCH NINTH EDITION PAUL C. COZBY Copyright © 2007 The McGraw-Hill Companies, Inc.
Inferential Statistics. Coin Flip How many heads in a row would it take to convince you the coin is unfair? 1? 10?
ANOVA P OST ANOVA TEST 541 PHL By… Asma Al-Oneazi Supervised by… Dr. Amal Fatani King Saud University Pharmacy College Pharmacology Department.
Hypothesis Testing Errors. Hypothesis Testing Suppose we believe the average systolic blood pressure of healthy adults is normally distributed with mean.
Week 13a Making Inferences, Part III t and chi-square tests.
Chapter 11: Additional Topics Using Inferences 11.1 – Chi-Square: Tests of Independence 11.2 – Chi-Square: Goodness of Fit 11.3 – Testing a Single Variance.
Soc 3306a Lecture 7: Inference and Hypothesis Testing T-tests and ANOVA.
Statistical Inference Statistical inference is concerned with the use of sample data to make inferences about unknown population parameters. For example,
Copyright © Cengage Learning. All rights reserved. 9 Inferences Based on Two Samples.
Introduction to ANOVA Research Designs for ANOVAs Type I Error and Multiple Hypothesis Tests The Logic of ANOVA ANOVA vocabulary, notation, and formulas.
Marshall University School of Medicine Department of Biochemistry and Microbiology BMS 617 Lecture 6 –Multiple hypothesis testing Marshall University Genomics.
T tests comparing two means t tests comparing two means.
Comparing Two Means Ch. 13. Two-Sample t Interval for a Difference Between Two Means.
Chapter 13 Understanding research results: statistical inference.
Hypothesis Testing. Suppose we believe the average systolic blood pressure of healthy adults is normally distributed with mean μ = 120 and variance σ.
Jump to first page Inferring Sample Findings to the Population and Testing for Differences.
Bonferroni adjustment Bonferroni adjustment (equally weighted) – Reject H 0j with p i
ANalysis Of VAriance (ANOVA) Used for continuous outcomes with a nominal exposure with three or more categories (groups) Result of test is F statistic.
1 השוואות מרובות מדדי טעות, עוצמה, רווחי סמך סימולטניים ד"ר מרינה בוגומולוב מבוסס על ההרצאות של פרופ' יואב בנימיני ופרופ' מלכה גורפיין.
Educational Research Inferential Statistics Chapter th Chapter 12- 8th Gay and Airasian.
Posthoc Comparisons finding the differences. Statistical Significance What does a statistically significant F statistic, in a Oneway ANOVA, tell us? What.
Multiple Endpoint Testing in Clinical Trials – Some Issues & Considerations Mohammad Huque, Ph.D. Division of Biometrics III/Office of Biostatistics/OPaSS/CDER/FDA.
Multiplicity Testing Procedure Selection in Clinical Trials Rachael Wen Ph.D JSM 2018 of 8.
I. Statistical Tests: Why do we use them? What do they involve?
Incorporating the sample correlation between two test statistics to adjust the critical points for the control of type-1 error Dror Rom and Jaclyn McTague.
Presentation transcript:

The Closure Principle Revisited Dror Rom Prosoft Clinical IMPACT Symposium November 20, 2014 Contributions by Chen Chen

This presentation revisits the Closure Principle of Marcus, Peritz, and Gabriel (1976) and its implementation by most multiple testing procedures, which I will show to be sometimes conservative. -Discuss a simple example of a test procedure that follows the original as well as a typical conservative implementation. -Present a generalization of Hochberg’s step-up procedure that is implemented using the original principle with some power comparisons -Utilize Simes’ global test to devise a closed testing procedure that may be powerful than some other Simes’ based procedures -Concluding remarks.

Hochberg and Tamhane (1987)

Now consider a different procedure: If the global null hypothesis is rejected, then reject the hypothesis with the smaller p-value

While some Global tests (example 2-degree of freedom Chi-Squared tests) can be used to make inferences on individual hypotheses, it is not always the case. For some alphas, type-1 error for individual hypotheses can exceed the nominal level. In many cases though, type-1 error can be calculated exactly, or bounded as I show next; in most cases, some slight adjustments can be made to control the maximum type-1 error.

Hochberg’s Procedure

2 1

Hochberg ,

Does this procedure have strong control of the FWER ? ? For two hypotheses: Yes

Three hypotheses

Conclusions/Future Research Closed testing procedures can be devised using global tests rather than local tests Examples: F-tests, chi-squared tests, Simes’ test, etc Need to extend to correlated statistics

References H OCHBERG, Y. (1998). A sharper Bonferroni procedure for multiple tests of significance. Biometrika, 75 (4), 800– 802. H OCHBERG, Y., & T AMHANE, A. C. (1987). Multiple Comparison Procedures. New York: Wiley. H OLM, S. (1979). A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics, 6, H OMMEL, G. (1988). A stagewise rejective multiple test Procedure based on a modified Bonferroni test. Biometrika, 75 (2), Jiangtao G., t C. Tamhane, A. C., Xi, D. & Rom, D. (2014). A class of improved hybrid Hochberg–Hommel type step-up multiple test procedures. Biometrika (To Appear). M ARCUS, R., P ERITZ, E.,& G ABRIEL, K. R. (1976). On closed testing procedures with special reference to ordered analysis of variance. Biometrika, 63 (3), Sarkar, S. K. Generalizing Simes’ Test and Hochberg’s Step UP Procedure. (2008) The Annals of Statistics, 36 no. 1, Sarkar, S. K. Some probability inequalities for ordered MTP random variables: a proof of the Simes conjecture. (1998) The Annals of Statistics, 26 no. 2, S IMES, R. J. (1986). improved Bonferroni procedure for multiple tests of significance. Biometrika, 73 (3),