Genome Presentation Schizosaccharomyces Pombe Anita Kim BME 088a - Surfing your Genome Prof. Todd Lowe February 20, 2003.

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Presentation transcript:

Genome Presentation Schizosaccharomyces Pombe Anita Kim BME 088a - Surfing your Genome Prof. Todd Lowe February 20, 2003

BackgroundRelated Species Saccharomyces Cerevisiae Sequenced after S. Pombe 12 Mb 13 Chromosomes Fission yeast A single-celled fungus Eukaryotic Found in Millet beer from East Africa in 1893 P. Linder “Pombe” is the Swahili word for beer 6 th Eukaryote genome sequenced Number of Articles Found From NCBI PubMed: 5,061

When and Who? February 21, 2002 The Wellcome Trust Sainger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Led by Dr. Paul Nurse Among the winners of the 2001 Nobel Prize for his research on the cell cycle in fission yeast

The Sequencing Found on 50 different genes 13.8 Mb (Megabases Has 3 chromosomes Chromosome I: 5.7 Mb Chromosome II: 4.6 Mb Chromosome III: 3.5 Mb Contains lowest number of protein coding genes recorded for a Eukaryote 4,824 protein-coding genes 33 pseudogenes G+C (guanine and cytosine) content: 36.0%

Why was it sequenced? Associated with human diseases such as cancer, which is found on 23 of the 50 genes Cystic Fibrosis, hereditary deafness, and diabetes Protein-coding genes identified that generate products with similarities to proteins coded by 289 genes that are mutated, amplified or deleted in human disease.

Bibliography The Forsburg Lab at the Cancer Center in the Sulk Institute in La Jolla, California National Center for Biotechnology Information – e&db=PubMed&list_uids= &dopt=Abstracthttp:// e&db=PubMed&list_uids= &dopt=Abstract The Wellcome Trust Sanger Institute taf/DynaPage.taf?file=/nature/journal/v415/n6874/full/ nature724_r.html