Diffusion Physics H 2 O in the body is always in random motion due to thermal agitation B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen.

Slides:



Advertisements
Similar presentations
Neuro-Imaging High Resolution Ex-Vivo MRI Ex-Vivo DTI of Brain Stem
Advertisements

Fund BioImag : Advanced MRI Contrast Mechanisms 1.How does moving blood affect the image phase ? 2.What is the effect of self-diffusion on.
1 Detecting Subtle Changes in Structure Chris Rorden –Diffusion Tensor Imaging Measuring white matter integrity Tractography and analysis.
Imaging Sequences part I
NON-EXPONENTIAL T 2 * DECAY IN WHITE MATTER P. van Gelderen 1, J. A. de Zwart 1, J. Lee 1,3, P. Sati 1, D. S. Reich 1, and J. H. Duyn 1. 1 Advanced MRI.
Institute for Biomedical Engineering EXCITE Afternoon Hands-On MRI Sessions: fMRI & DTI.
Methods for Medical Imaging– Prof. G. Baselli 2012 Diffusion weighted MRI and DTI tractography Maria Giulia Preti
DTI group (Pitt) Instructor: Kevin Chan Kaitlyn Litcofsky & Toshiki Tazoe 7/12/2012.
Parameters and Trade-offs
DIFFUSION TENSOR IMAGING
Diffusion Physics - Thermal Agitation - In steady state, the motion of water is dominated by thermal agitation. -This causes “random” motion of water.
MaxEnt 2007 Saratoga Springs, NY
The Danish National Research Foundation’s Center of Functionally Integrative Neuroscience Aarhus University / Aarhus University Hospital Diffusion weighted.
Mitglied der Helmholtz-Gemeinschaft Diffusion MRI in the Neurosciences N. Jon Shah Institute of Neuroscience and Medicine – 4 Research Centre Juelich
Diffusion Tensor MRI And Fiber Tacking Presented By: Eng. Inas Yassine.
Diffusion Tensor Imaging Tim Hughes & Emilie Muelly 1.
Master thesis by H.C Achterberg
Introduction to Diffusion-weighted Imaging Joelle Sarlls, Ph.D. NIH MRI Research Facility National Institute of Neurological Disorder and Stroke National.
Functional Diffusion Maps (fDMs) for Brain Tumor Treatment Response Monitoring Benjamin M. Ellingson, Ph.D. Assistant Professor of Radiology Dept. of Radiological.
Introduction to diffusion MRI
05/19/11Why’n’how | Diffusion model fitting and tractography0/25 Diffusion model fitting and tractography: A primer Anastasia Yendiki HMS/MGH/MIT Athinoula.
Multimodal Visualization for neurosurgical planning CMPS 261 June 8 th 2010 Uliana Popov.
Tissue Contrast intrinsic factors –relative quantity of protons tissue proton density –relaxation properties of tissues T1 & T2 relaxation secondary factors.
Advanced pulse sequences
Brain Lab Imaging Didactics
Pulse sequences.
Pulse Sequences Types of Pulse Sequences: Functional Techniques
Einstein on Brownian Motion 1905 five important papers DTI Basics – Water Diffusion (DTI – Diffusion Tensor Imaging)
Contrast Mechanism and Pulse Sequences Allen W. Song Brain Imaging and Analysis Center Duke University.
DIFFUSION & PERFUSION MRI IMAGING Dr. Mohamed El Safwany, MD.
Disclosures Paid Consultant, MedQIA LLC Paid Consultant, Agios Pharmaceuticals, Inc. Consultant, Genentech Consultant, Siemens Medical Systems B.M. Ellingson,
Instructor Kwan-Jin Jung, Ph.D. (Carnegie Mellon University) Technical Assistant Nidhi Kohli (Carnegie Mellon University) David Schaeffer (University of.
Contrast Mechanisms in MRI Introduction to Cardiovascular Engineering Michael Jay Schillaci, PhD Managing Director, Physicist Tuesday, September 16 th,
High Resolution 3D Diffusion Pulse Sequence Dept. of Radiology Medical Imaging Research Lab. University of Utah Eun-Kee Jeong, Ph.D. Ph.D. Seong-Eun Kim,
Luke Bloy1, Ragini Verma2 The Section of Biomedical Image Analysis
Contrast Mechanism and Pulse Sequences
Functional Correlates of Diffusion Tensor Imaging in Spinal Cord Injury Benjamin M. Ellingson, Ph.D. 1,2 Shekar N. Kurpad, M.D., Ph.D. 2 Brian D. Schmit,
Fiber Demixing with the Tensor Distribution Function avoids errors in Fractional Anisotropy maps Liang Zhan 1,Alex D. Leow 2,3, Neda Jahanshad 1, Arthur.
MRI Physics Dr Mohamed El Safwany, MD.. MRI Magnetic Resonance Imaging Magnetic Resonance Imaging.
Diffusion Physics H 2 O in the body is always in random motion due to thermal agitation B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen.
Disclosures Paid Consultant, MedQIA LLC Paid Consultant, Agios Pharmaceuticals, Inc. Consultant, Genentech Consultant, Siemens Medical Systems B.M. Ellingson,
FMRI – Week 4 – Contrast Scott Huettel, Duke University MR Contrast FMRI Graduate Course (NBIO 381, PSY 362) Dr. Scott Huettel, Course Director.
BMI2 SS08 – Class 7 “functional MRI” Slide 1 Biomedical Imaging 2 Class 7 – Functional Magnetic Resonance Imaging (fMRI) Diffusion-Weighted Imaging (DWI)
Neuroimaging with MRI Dr Mohamed El Safwany, MD..
Measuring Water Diffusion In Biological Systems Using Nuclear Magnetic Resonance Karl Helmer HST 583, 2006
MRI: Contrast Mechanisms and Pulse Sequences
Principles of MRI Physics and Engineering Allen W. Song Brain Imaging and Analysis Center Duke University.
DTI Acquisition Guide Donald Brien February 2016.
Jalal jalal shokouhi – MD General secretary of Iranian society of radiology President of Iranian radiologists cooperative 17th -18th December 2010, Shahid.
Einstein on Brownian Motion 1905 five important papers DTI Basics – Water Diffusion.
COMPARATIVE LATERALIZING ABILITY of MULTIMODALITY MR IMAGING in TEMPORAL LOBE EPILEPSY ¹ Karabekir Ercan, M.D. ¹ ¹ H.Pinar Gunbey, M.D. ¹ ¹ Elcin Zan,
Advanced fMRI Methods John VanMeter, Ph.D. Center for Functional and Molecular Imaging Georgetown University Medical Center.
LIVER MRI MANDATORY SEQUENCES P.Zerbib, A.Luciani, F.Pigneur, A.Rahmouni Henri Mondor Hospital – Créteil, Paris Radiology Department Pr.A.RAHMOUNI.
Diffusion Tensor MRI From Deterministic to Probabilistic Modelling
DIFFUSION TENSOR IMAGING AND TRACTOGRAPHY. Introduction Diffusion- random molecular motion also known as Brownian movement Biological systems depend on.
Parameters which can be “optimized” Functional Contrast Image signal to noise Hemodynamic Specificity Image quality (warping, dropout) Speed Resolution.
INFLUENCE OF FRACTIONAL ANISOTROPY THRESHOLD FOR TRACT BASED DIFFUSION TENSOR ANALYSIS OF UNCINATE FASCICLES IN ALZHEIMER DISEASE Toshiaki Taoka, Toshiaki.
Intratumoral topography of CNS gliomas revealed by diffusion tensor imaging: correlations with tumor volume and grade A. Jakab 1, P. Molnár 2, M. Emri.
Microstructure Imaging Sequence Simulation Toolbox
Diffusion Tensor Imaging
DIFFUSION TENSOR TRACTOGRAPHY OF THE SPINAL CORD
Introduction to diffusion MRI
Introduction to diffusion MRI
LIVER MRI Kyung Hee University Hospital Hyoung Jung Kim
Introduction to diffusion MRI
Figure 2 New functional imaging techniques in lymphoma
Eduardo H. M. S. G. de Figueiredo, BSc, Arthur F. N. G
MRI Pulse Sequences: IR, EPI, PC, 2D and 3D
Introduction to diffusion MRI
3T-versus-7T DTI with 36 diffusion-encoding directions at b = 3000 s/mm2 and 2.0 × 2.0 × 2.0 mm isotropic voxel resolution. 3T-versus-7T DTI with 36 diffusion-encoding.
Presentation transcript:

Diffusion Physics H 2 O in the body is always in random motion due to thermal agitation B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

- Diffusion Coefficient is dependent on Temperature and Viscosity of Tissue Diffusion Coefficient (rate of motion) Temperature Size of Molecule Viscosity Diffusion Physics B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

-The “rate” of water motion is determine by a diffusion coefficient, “D”. -Mean displacement of water molecules is related to “D” by Einstein’s equation: TimeDiffusion Coefficient Mean Displacement Diffusion Physics B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

Detecting Diffusion with MRI - Intravoxel Incoherent Motion Ellingson et al., Concepts in MR, 2008 B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 From: Ellingson, Concepts in MR, 2008

Detecting Diffusion with MRI - Intravoxel Incoherent Motion Detected DWI Signal MRI Signal w/o Diffusion Sensitivity Variability in Phase of “Tagged” H 2 O Level of Diffusion Weighting Diffusion Coefficient B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

Intravoxel Incoherent vs Coherent Motion B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Diffusion Effects (Incoherent) Flow Effects (Coherent) -- Phase Contrast (PC)-MRI d  =  /3 radians  Velocity

Proton on H 2 O Image Voxel  = t 1  = t 2  = t 3 MRI Signal Diffusion Time (or level of diffusion weighting) B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

Factors that affect diffusion coefficient, D Diffusion Time, t -Physical time between gradients used to “tag” H 2 O B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

Factors that affect diffusion coefficient, D Size of Compartment(s) - If we set a limit for  r, then we observe an apparent diffusion coefficient, ADC B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Physical Compartment Size Expected Compartment Size

Factors that affect diffusion coefficient, D Tortuosity of the Compartments - More tortuous paths look like slow diffusion B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Tortuosity Actual Path Expected Path

Factors that affect diffusion coefficient, D Viscosity and Temperature B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Diffusion Coefficient (rate of motion) Temperature Viscosity Pure H 2 OCSFInfection (WBCs)Lymphoma

Factors that affect diffusion coefficient, D -Diffusion Time, t -Physical time between gradients used to “tag” H 2 O -Size of Compartment(s) - If we set a limit for  r, then we observe an apparent diffusion coefficient, ADC -Tortuosity of the Compartments - More tortuous paths look like slow diffusion -Temperature -Viscosity *** We can only measure “ADC” because of all the factors that change “D”! *** B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

Steps in Performing DWI DWI (isotropic): –Collect a DWI (b = 1000 or 500 s/mm 2 ) dataset by applying motion probing gradients in the x, y, and z-direction. Make sure TE is low and TR is long to increase SNR For higher resolution scans, use a lower b-value –Collect a T2w dataset (b = 0 s/mm 2 ) –Collect a low b-value, flow nulled dataset (b = 50 s/mm 2 ) –Average DWIs from 3 directions –Calculate ADC B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 For b-values < 1000

DWI vs. ADC DWI –Images collected during application of a “diffusion sensitizing gradient” –Contains T1, T2, and ADC effects –“Restricted diffusion”, long T2, and short T1 all influence DWIs B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 b = 1000 From: Taouli, Radiology, 2010 b = 750

DWI vs. ADC DWI –Influence of T2 in DWIs is known as “T2 shine through” B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 From: Taouli, Radiology, 2010 b = 500 ADC Map

DWI vs. ADC ADC –Quantitative –Calculated from DWI and T2w (b = 0 or low b-value) B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 From: Taouli, Radiology, 2010

DWI vs. ADC ADC –Reflects diffusion magnitude –Eliminates long T2 and short T1 effects B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 From: Taouli, Radiology, 2010

DWI vs. ADC DWI –Influence of T2 in DWIs is known as “T2 shine through” B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 From: Taouli, Radiology, 2010 b = 500 ADC Map

Diffusion Tensor Imaging (DTI) Isotropic Diffusion Anisotropic Diffusion From: Ellingson, Concepts in MR, 2008 B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

Diffusion Tensor Imaging (DTI) B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Directional Encoding 6 directions (min)15 directions 25 directions41 directions

Diffusion Tensor Imaging (DTI) B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 The Diffusion Tensor:

Diffusion Tensor Imaging (DTI) B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Isotropic Diffusion 1 = 2 = 3 Anisotropic Diffusion 1 > 2, 3 From Ellingson, Concepts in MR, 2008

Fractional Anisotropy (FA) IsotropicAnisotropic FA = 0 FA = 1 B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

DTI Tractography In the CNS and MSK, lADC is parallel to axon orientation B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

DTI Tractography In the CNS, lADC is parallel to axon orientation B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

DTI Tractography In the MSK, lADC is parallel to muscle fiber orientation From: University of Rochester B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

DTI Tractography In the heart, lADC is also parallel to muscle fiber orientation From: University of Oxford B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 From: Eindhoven University of Technology

DTI Tractography Spinal Cord Injury B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 From Ellingson, Neurosurgery:Spine, 2010

Steps in Performing DTI DTI (6 directions): –Collect a DWI (b = 1000 or 500 s/mm 2 ) along 6 non-collinear directions –Collect a T2w dataset (b = 0 s/mm 2 ) –Calculate Diffusion Tensor: Calculate D in 6 different directions Set up the encoding matrix Define Tensors Solve Tensor Equations B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

Applications of Diffusion MRI in the Abdomen B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

Diffusion MR Imaging of the Liver B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010

Diffusion MR Imaging of the Liver B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Common pulse sequences –Single-shot spin-echo (SE) echoplanar with fat saturation With breathhold (20-30 seconds; sensitivity for lesion detection = 84.3% Parikh, 2008 ) –Need thicker slices (8-10 mm) for good SNR and good liver coverage Resp. gated (3-6 min; sensitivity for lesion detection = 93.7% Parikh, 2008 ) –Thinner slices can be used (5 mm) –Better image quality, SNR and ADC quantification Taouli, 2009

Diffusion MR Imaging of the Liver B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Common pulse sequences –Single-shot spin-echo (SE) echoplanar with fat saturation With breathhold (20-30 seconds; sensitivity for lesion detection = 84.3% Parikh, 2008 ) –Need thicker slices (8-10 mm) for good SNR and good liver coverage Resp. gated (3-6 min; sensitivity for lesion detection = 93.7% Parikh, 2008 ) –Thinner slices can be used (5 mm) –Better image quality, SNR and ADC quantification Taouli, 2009 Common b-values –b = 0 image (no diffusion weighting…essentially a “poor man’s” T2w image)

Diffusion MR Imaging of the Liver B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Common pulse sequences –Single-shot spin-echo (SE) echoplanar with fat saturation With breathhold (20-30 seconds; sensitivity for lesion detection = 84.3% Parikh, 2008 ) –Need thicker slices (8-10 mm) for good SNR and good liver coverage Resp. gated (3-6 min; sensitivity for lesion detection = 93.7% Parikh, 2008 ) –Thinner slices can be used (5 mm) –Better image quality, SNR and ADC quantification Taouli, 2009 Common b-values –b = 0 image (baseline with no diffusion weighting…essentially a “poor man’s” T2w image –Low b-value (b < 150 s/mm 2 ) “Flow Nulled” Nulls the intrahepatic vascular signal Allows for better detection of focal liver lesions (van den Bos, 2008; Parikh, 2008; Okada, 1998; Hussain, 2005) ~2% change in ADC

Diffusion MR Imaging of the Liver B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Common pulse sequences –Single-shot spin-echo (SE) echoplanar with fat saturation With breathhold (20-30 seconds; sensitivity for lesion detection = 84.3% Parikh, 2008 ) –Need thicker slices (8-10 mm) for good SNR and good liver coverage Resp. gated (3-6 min; sensitivity for lesion detection = 93.7% Parikh, 2008 ) –Thinner slices can be used (5 mm) –Better image quality, SNR and ADC quantification Taouli, 2009 Common b-values –b = 0 image (baseline with no diffusion weighting…essentially a “poor man’s” T2w image –Low b-value (b < 150 s/mm 2 ) “Flow Nulled” Nulls the intrahepatic vascular signal Allows for better detection of focal liver lesions (van den Bos, 2008; Parikh, 2008; Okada, 1998; Hussain, 2005) –High b-value (500 < b < 1000 s/mm 2 ) Useful for focal liver lesion characterization (Taouli, 2003; Kim, 1999)

Diffusion MR Imaging of the Liver B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Visual liver lesion characterization with DWI From: Taouli, Radiology, 2010

Diffusion MR Imaging of the Liver B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Visual liver lesion characterization with DWI From: Taouli, Radiology, 2010 b = 500ADC From: Xu, J Comput Assist Tomogr, 2010

Diffusion MR Imaging of the Liver B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Visual liver lesion characterization with DWI From: Xu, J Comput Assist Tomogr, DWI has higher specificity than CE

Diffusion MR Imaging of the Liver B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 From: Colagrande, Radiol Med, 2006 Cirrhotic Liver--  ADC Liver Cysts --  ADC Angioma--  ADC FNH--  ADC Hepatocarcimoma --  ADC (mixed results) Metastasis--  ADC (mixed results)

Diffusion MR Imaging of the Kidneys B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Directionality -- DTI?

Diffusion MR Imaging of the Kidneys B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Directionality -- DTI? From: Kido, Acta Radiol, 2010 Fractional Anisotropy (DTI)

Diffusion MR Imaging of the Kidneys B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 From: Colagrande, Radiol Med, 2006 b = 0 b = 500 ADC From: Kido, Acta Radiol, 2010 From: Kilickesmez, J Comput Assist Tomogr, 2009

Diffusion MR Imaging of the Kidneys B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Renal Fibrosis Animal Model -- From: Togao, Radiology, 2010

Diffusion MR Imaging of the Kidneys B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 Renal Cell Carcinoma From: Kilickesmez, J Comput Assist Tomogr, 2009 Contrast-Enhanced T1b = 1000ADC

Diffusion MR Imaging of the Kidneys B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010 From: Kilickesmez, J Comput Assist Tomogr, 2009

Summary Diffusion MRI is an MR technique that can quantify the magnitude of H 2 0 diffusivity within tissues –Microstructural information ADC calculated from diffusion MR images is influenced by: –Cellularity –Tissue viscosity and temperature –Diffusion Time –Compartment Size (cell size and shape) –Tortuosity of environment DTI is useful for directionality of diffusion restrictions –CNS, MSK, Kidney DWI/ADC maps can be used to characterize many pathologies of the abdomen –Liver and Kidney pathologies are most common abdominal diffusion MR studies B.M. Ellingson, Ph.D., Dept. of Radiological Sciences, David Geffen School of Medicine at UCLA, 2010