Axonal morphometry n Maxsim n NeuronTracer n Divers Real axons (& dendrites) Parameters & Properties (Numerical values)

Activities 99 Q1-2

Maxsim ( ) n Imports 2-d or 3-d data from NeuroLucida n Displays and quantifies markers & trees n (will) Import data from hand-drawings n Exports results to Excel

Maxsim n Imports 2-d or 3-d data from NeuroLucida n Displays and quantifies markers & trees n (will) Import data from hand-drawings n Exports results to Excel

3-d 2-d

Maxsim n Imports 2-d or 3-d data from NeuroLucida n Displays and quantifies markers & trees n (will) Import data from hand-drawings n Exports results to Excel

Maxsim n Imports 2-d or 3-d data from NeuroLucida n Displays and quantifies markers & trees n (will) Import data from hand-drawings n Exports results to Excel

Maxsim n Imports 2-d or 3-d data from NeuroLucida n Displays and quantifies markers & trees n (will) Import data from hand-drawings n Exports results to Excel

Adds-on to Maxsim n Depth analysis & 2-d densities of cells n Cortical flattening

Adds-on to Maxsim n Depth analysis & 2-d densities of cells n Cortical flattening

Depth of cells 2-d density

Adds-on to Maxsim n Depth analysis & 2-d densities of cells n Cortical flattening

NeuronTracer™ n Imports confocal stacks (TIFF & Imaris) n 3-d Browser and image processing n Segmentation -> “graph” n Graph cleaning (automatic & manual) n Morphometry & Statistics

NeuronTracer™ n Imports confocal stacks (TIFF & Imaris) n 3-d Browser and image processing n Vectorization -> “graph” n Graph cleaning (automatic & manual) n Morphometry & Statistics

NeuronTracer™ n Imports confocal stacks (TIFF & Imaris) n 3-d Browser and image processing n Segmentation -> “graph” n Graph cleaning (automatic & manual) n Morphometry & Statistics

Conclusion Maxsim : available at IBCM On SGI: “ maxsim ” Maxsim : available at IBCM On SGI: “ maxsim ” n NeuronTracer : in development User interaction would be appreciated n Other : service & advice on request