The Lim domain protein UNC-95 is required for the assembly of muscle attachment structures and is regulated by the RING finger protein RNF-5 in C. elegans.

Slides:



Advertisements
Similar presentations
Functions of Acyl-CoA Binding Proteins in C. elegans Introduction Results Conclusions Future Perspectives Ida Coordt Elle 1, Karina Trankjær Simonsen 2,
Advertisements

C. elegans PAT-4/ILK Functions as an Adaptor Protein within Integrin Adhesion Complexes Mackinnon, C., Qadota, H., Norman, K., Moerman, D., Williams, B.
Today’s lecture (Based on Chapter 1): 1. Basic organization of the cell 2. The static cell vs the living cell 3. Experimental approaches in cell physiology.
The UNC-112 gene in Caenorhabditis elegans Encodes a Novel Component of Cell-Matrix Adhesion Structures Required for Integrin Localization in the Muscle.
The Unfolded Protein Response in C. Elegans Biology 314, Advanced Cell Biology, Spring 2004.
Molecular characterization of the Caenorhabditis elegans ALP/Enigma gene alp-1 Caroline R. McKeown, Hsiao-Fen Han, and Mary C. Beckerle Developmental Dynamics.
C. Elegans.
Genetic Screen and Analysis of Regulators of Sexually Dimorphic Motor Neuron Development Jack Timmons, Esther Liu, Zachary Palchick, Sonya Krishnan, and.
Vectors for RNAi.
Microarray: An Introduction
The distribution and function of the Adenovirus L4-33K protein
Volume 17, Issue 7, Pages (April 2007)
Elucidating the ESRE Stress Response Network
Identification of ESRE Regulatory Molecules
Volume 35, Issue 1, Pages (July 2002)
Volume 14, Issue 1, Pages (January 2008)
Marc Furriols, Sarah Bray  Current Biology 
Paula M. Loria, Angie Duke, James B. Rand, Oliver Hobert 
Tensin Stabilizes Integrin Adhesive Contacts in Drosophila
Control of Gene Expression in Eukaryotic cells
Volume 27, Issue 22, Pages e5 (November 2017)
The TBP-like Factor CeTLF Is Required to Activate RNA Polymerase II Transcription during C. elegans Embryogenesis  Linda Kaltenbach, Michael A. Horner,
Relationship between Genotype and Phenotype
Regulation of Presynaptic Terminal Organization by C
Paola Dal Santo, Mary A Logan, Andrew D Chisholm, Erik M Jorgensen 
An Intersubunit Interaction Regulates Trafficking of Rod Cyclic Nucleotide-Gated Channels and Is Disrupted in an Inherited Form of Blindness  Matthew.
Volume 85, Issue 2, Pages (January 2015)
nrde-3-dependent silencing of endogenous RNAi targets and transgenes.
Melissa Hernandez-Fleming, Ethan W. Rohrbach, Greg J. Bashaw 
Act up Controls Actin Polymerization to Alter Cell Shape and Restrict Hedgehog Signaling in the Drosophila Eye Disc  Aude Benlali, Irena Draskovic, Dennis.
Douglas J Guarnieri, G.Steven Dodson, Michael A Simon  Molecular Cell 
Genomic cis-Regulatory Architecture and trans-Acting Regulators of a Single Interneuron-Specific Gene Battery in C. elegans  Adam S Wenick, Oliver Hobert 
Repression of Cell-Cell Fusion by Components of the C
Chaogu Zheng, Felix Qiaochu Jin, Martin Chalfie  Cell Reports 
Vitaly Zimyanin, Nick Lowe, Daniel St Johnston  Current Biology 
lin-35 and lin-53, Two Genes that Antagonize a C
Serotonin Inhibition of Synaptic Transmission
The Claudin-like Megatrachea Is Essential in Septate Junctions for the Epithelial Barrier Function in Drosophila  Matthias Behr, Dietmar Riedel, Reinhard.
C. elegans PAT-6/Actopaxin Plays a Critical Role in the Assembly of Integrin Adhesion Complexes In Vivo  Xinyi Lin, Hiroshi Qadota, Donald G. Moerman,
The Noncanonical Binding Site of the MED-1 GATA Factor Defines Differentially Regulated Target Genes in the C. elegans Mesendoderm  Gina Broitman-Maduro,
Volume 6, Issue 2, Pages (August 2000)
Volume 134, Issue 2, Pages (July 2008)
Volume 32, Issue 5, Pages (December 2001)
Volume 71, Issue 1, Pages (July 2011)
Codependent Activators Direct Myoblast-Specific MyoD Transcription
Di Jiang, Edwin M. Munro, William C. Smith  Current Biology 
Heterochronic Genes and the Nature of Developmental Time
Models for the role of WW-domain proteins in regulation of tombusvirus replication. Models for the role of WW-domain proteins in regulation of tombusvirus.
Dpl-1 DP and efl-1 E2F Act with lin-35 Rb to Antagonize Ras Signaling in C. elegans Vulval Development  Craig J. Ceol, H.Robert Horvitz  Molecular Cell 
The C. elegans evl-20 Gene Is a Homolog of the Small GTPase ARL2 and Regulates Cytoskeleton Dynamics during Cytokinesis and Morphogenesis  Igor Antoshechkin,
The Role of RNA Editing by ADARs in RNAi
MAX-1, a Novel PH/MyTH4/FERM Domain Cytoplasmic Protein Implicated in Netrin- Mediated Axon Repulsion  Xun Huang, Hwai-Jong Cheng, Marc Tessier-Lavigne,
The ced-8 Gene Controls the Timing of Programmed Cell Deaths in C
Magalie Lecourtois, François Schweisguth  Current Biology 
Drosophila Maelstrom Ensures Proper Germline Stem Cell Lineage Differentiation by Repressing microRNA-7  Jun Wei Pek, Ai Khim Lim, Toshie Kai  Developmental.
Volume 5, Issue 4, Pages (April 2000)
SUMO-1 Modification Represses Sp3 Transcriptional Activation and Modulates Its Subnuclear Localization  Sarah Ross, Jennifer L Best, Leonard I Zon, Grace.
Volume 11, Issue 21, Pages (October 2001)
The REF-1 Family of bHLH Transcription Factors Pattern C
Nathan W. Goehring, Jon Beckwith  Current Biology 
dex-1 expression in the seam cells is regulated by DAF-16.
Neil V. Whittock, Frances J. Smith, W.H. Irwin McLean 
Volume 109, Issue 5, Pages (May 2002)
Integration of Semaphorin-2A/MAB-20, ephrin-4, and UNC-129 TGF-β Signaling Pathways Regulates Sorting of Distinct Sensory Rays in C. elegans  Richard.
Peter Swoboda, Haskell T. Adler, James H. Thomas  Molecular Cell 
The C. elegans evl-20 Gene Is a Homolog of the Small GTPase ARL2 and Regulates Cytoskeleton Dynamics during Cytokinesis and Morphogenesis  Igor Antoshechkin,
Integrins modulate the Notch pathway by regulating its intracellular trafficking and/or processing. Integrins modulate the Notch pathway by regulating.
Transcriptional and Developmental Functions of the H3
Volume 98, Issue 3, Pages e5 (May 2018)
David R. Sherwood, James A. Butler, James M. Kramer, Paul W. Sternberg 
Presentation transcript:

The Lim domain protein UNC-95 is required for the assembly of muscle attachment structures and is regulated by the RING finger protein RNF-5 in C. elegans Broday L. et al. June issue of JCB Ruttenberg Cancer Center (NY)

Reminder Super Worm Club begins early March  Everyone must attend or else there will be dire consequences  This is the biggest event to hit the lower mainland in years so don’t miss it!  Remember to bring Beta blockers for Nick

Back to the paper… Brief overview of C. elegans muscle Role of UNC-95 in sarcomere assembly Role of RNF-5 in localization of UNC-95

Muscle Structure (C. elegans II)

Why UNC-95? LIM domain proteins have recently been shown to aid in assembly of these structures UNC-97 is a LIM domain protein and has a central role UNC-95 is a LIM domain protein that was previously uncharacterized

unc-95 Mutants Zengal and Epstein (1980) found 2 mutants  Very slow to paralyzed  Lack of striations and disorganized thick and thin filaments

Mutant Phenotype Long arrows indicate cell/cell boundaries, short arrows indicate dense bodies Disorganized thin filaments Disorganized thick filaments Disorganized dense bodies

EM of unc-95 animals Irregular dense bodies Random dense body spacing Barely recognizable M-line Disorganized thin filaments Disorganized thick filaments No recognizable I-line

Characterization of unc-95 (su33) Y105E8.6 found associated with RNF-5 in a Y2H screen Hypothesized to be unc-95 Y105E8.6 was sequenced in su33 mutant and found to have a CAG TAG mutation causing a truncated protein without LIM domain

Rescue with functional fusion GFP translational fusion with standard 2.5kb upstream (promoter) created Worms were injected with construct and assayed RT-PCR showed that the mutant gene was in fact transcribed

Rescue with functional fusion A,B,C: Rescue with translational fusion D,E: Protein structure F: RT-PCR of mutant and wild type show comparable transcription G,H,I: RNAi with Y105E8A.6 construct

Role of UNC-95 during embryogenesis A-F: anti-UNC-52/perlecan staining showing wild type phenotype in mutant G-N: anti-PAT-3/  integrin staining shows wild type phenotype until post-hatching O-T: anti DEB- 1/vinculin staining is diffuse in all mutant stages

Conclusions from this data UNC-95 not required for localization of UNC-52 perlecan in basement membrane Recruitment of  -integrin to basal sarcolemma not dependant on UNC-95 UNC-95 is required for recruitment of vinculin

Analysis of unc-95 localization A-I: Expression is seen throughout muscle cells but especially in cellular attachment sites as indicated by the various arrows J-L: Expression of truncated unc-95 translational fusion shows low overall expression and no expression at cellular attachment sites

Role of RNF-5 Colocalizes with UNC-95 in dense bodies Regulates levels of UNC-95 Regulates UNC-95 subcellular location

Colocalization of RNF-5 and UNC-95 A,B: anti-RNF-5 and anti-DEB-1-vinculin C,D: same as A,B but with RNAi E: rnf-5 mutant stained with anti-DEB-1-vinculin F: unc-95 anti RNF-5 G: localization of RNF-5 in dense bodies H: colocalization of RNF-5 and UNC-95 in yellow

RNF regulation of UNC-95 A: UNC-95::GFP A: UNC-95::GFP with RNF-5 overexpressed with a heat shock promoter A: UNC-95::GFP with overexpression of a truncated form of RNF-5 (no RING finger domain) Conclusion: an intact RING finger domain is required for proper regulation of UNC-95

RNF-5 RNAi RNAi was used to deplete the levels of RNF-5 and an increase in GFP expression from UNC-95::GFP is seen in B and C In heterozygous rnf-5 mutants, a similar increase in GFP expression is seen in (D and E)

Summary Y105E8.6 is unc-95 UNC-95 is required for proper recruitment of vinculin for initial assembly of muscle attachment sites UNC-95 is localized primarily to muscle attachment sites RNF-5 colocalizes with UNC-95 and regulates its location and levels

Guess the criminal

Bill Gates