What I’ve done this summer Institute of Molecular Biology – Academia Sinica Dr. Che-Kun James Shen 沈哲鯤博士 National Health Research Institutes Dr. Xin Chen.

Slides:



Advertisements
Similar presentations
Section G Gene manipulation
Advertisements

Recombinant DNA Technology
Dolly the sheep ( ) 1. Animal and human cloning 2. Gene cloning.
Recombinant DNA Technology. Recombinant DNA Technology combines DNA from different sources – usually different species Utility: this is done to study.
Chapter 4: recombinant DNA
Genetic Engineering (and other cool molecular biology techniques)
ACADEMIA SINICA IBMS 嚴仲陽 美國德州貝勒醫學院 博士 Specialty:
Recombinant DNA Introduction to Recombinant DNA technology
10 Genomics, Proteomics and Genetic Engineering. 2 Genomics and Proteomics The field of genomics deals with the DNA sequence, organization, function,
1 Characterization, Amplification, Expression Screening of libraries Amplification of DNA (PCR) Analysis of DNA (Sequencing) Chemical Synthesis of DNA.
Cloning:Recombinant DNA
Synthetic Biology Crash Course DAY ONE. Pre-Assessment 1:00-1:10.
Goal of this Chapter 20: This chapter is introducing many genetic technologies that you will need to understand. -Using Vectors-PCR -Using cDNA -Transformation/Transduction.
Manipulating the Genome: DNA Cloning and Analysis 20.1 – 20.3 Lesson 4.8.
Construction, Transformation, and Prokaryote Expression of a Fused GFP and Mutant Human IL-13 Gene Sequence Lindsay Venditti, Department of Biological.
Definitions: 1. Genetic engineering- remaking genes for practical purposes 2. Recombinant DNA- DNA made from two or more different organisms 3. Restriction.
20.1 – 1 Look at the illustration of “Cloning a Human Gene in a Bacterial Plasmid” (Figure 20.4 in the orange book). If the medium used for plating cells.
DNA Technology- Cloning, Libraries, and PCR 17 November, 2003 Text Chapter 20.
Genetic Engineering. Tools of Molecular Biology DNA Extraction Cutting DNA Restriction Enzymes Recognize certain sequences of DNA and cut the hydrogen.
AP Biology: Chapter 14 DNA Technologies
Chapter 9 – DNA-Based Information Technologies
Manufacture of Human Interleukin 13 Protein Using a Prokaryotic Expression System Ryan Rupp, York College of Pennsylvania, Department of Biological Sciences.
Trends in Biotechnology
20.1 – 1 Look at the illustration of “Cloning a Human Gene in a Bacterial Plasmid” (Figure 20.4 in the orange book). If the medium used for plating cells.
DNA Technology Chapter 20.
Recombinant DNA I Basics of molecular cloning Polymerase chain reaction cDNA clones and screening.
How do you identify and clone a gene of interest? Shotgun approach? Is there a better way?
DNA Cloning and PCR.
Today: Biotechnology. Over 600 recent transposon insertions were identified by examining DNA from 36 genetically diverse humans. Tbl 1 Which transposable.
BSL2016 / 2018 – Lecture 7 – cDNA libraries cDNA synthesis results in the generation of 1000’s of cDNA molecules. All these cDNA molecules are derived.
Restriction Nucleases Cut at specific recognition sequence Fragments with same cohesive ends can be joined.
Fig Chapter 12: Genomics. Genomics: the study of whole-genome structure, organization, and function Structural genomics: the physical genome; whole.
DNA Technologies.
DNA Technology. Overview DNA technology makes it possible to clone genes for basic research and commercial applications DNA technology is a powerful set.
Revision – Concept map.
19.1 Techniques of Molecular Genetics Have Revolutionized Biology
AP Biology DNA Study Guide. Chapter 16 Molecular Basis of Heredity The structure of DNA The major steps to replication The difference between replication,
Biotechnology What does it mean? Tools and Technologies Selected Applications Biotechnology 1: any method based on knowledge of biological processes that.
RECOMBINANT DNA TECHNOLOGY PART 2 Quiz Essay 2 Topics Molecular Topics: 35 points Emphasis: data interpretation, critical thinking with a short answer.
GENETIC ENGINEERING CHAPTER 20
13-1 Copyright  2005 McGraw-Hill Australia Pty Ltd PPTs t/a Biology: An Australian focus 3e by Knox, Ladiges, Evans and Saint Chapter 13: Genetic engineering.
Molecular Biology II Lecture 1 OrR. Restriction Endonuclease (sticky end)
Molecular Basis for Relationship between Genotype and Phenotype DNA RNA protein genotype function organism phenotype DNA sequence amino acid sequence transcription.
Molecular Genetic Technologies Gel Electrophoresis PCR Restriction & ligation Enzymes Recombinant plasmids and transformation DNA microarrays DNA profiling.
RFLP ((Restriction Fragment Length Polymorphism)
Molecular Cloning.
Molecular Basis for Relationship between Genotype and Phenotype DNA RNA protein genotype function organism phenotype DNA sequence amino acid sequence transcription.
Plasmids that contain l cos sites.
Recombinant DNA Techniques chapter 18 Part I techniques and their applications. 1. Restriction Digest (to be done in lab) 2.Southern Blot 3.Northern.
AIM: Genetic Engineering: changing the DNA of living organisms. 1. Inserting genes into other organisms 2. Selective Breeding 3. Cloning.
Plan A Topics? 1.Making a probiotic strain of E.coli that destroys oxalate to help treat kidney stones in collaboration with Dr. Lucent and Dr. VanWert.
Topic Cloning and analyzing oxalate degrading enzymes to see if they dissolve kidney stones with Dr. VanWert.
Molecular Cloning. Definitions   Cloning :   Obtaining a piece of DNA from its original source (Genome) and introducing it in a DNA vector   Sub-cloning:
RECOMBINANT DNA DNA THAT CONTAINS DNA SEGMENTS OR GENES FROM DIFFERENT SOURCES. DNA TRANSFERRED FROM ONE PART OF A DNA MOLECULE TO ANOTHER, FROM ONE CHROMOSOME.
REVIEW OF MOLECULAR GENETICS DR. EDELBERG. Genes, DNA, & Chromosomes.
Figure 20.0 DNA sequencers DNA Technology.
Exam 2 M 10/29 at 7-8:30pm in UTC 2.102A Review Th 10/25 at 5-7pm in WRW 102 Bonus #1 due now Last day to drop with a ‘Q’…10/24.
Today: Biotechnology Exam #2 Th 10/23 in class.
Recombinant DNA Techniques chapter 19
Biotech Tools Review
Step 1: amplification and cloning procedures
Vav‐1 gene‐targeting strategy.
Recombinant DNA Techniques chapter 19
Relationship between Genotype and Phenotype
Recombinant DNA Techniques chapter 18 begins page 510
Lecture 9 Genome Mapping By Ms. Shumaila Azam
Overview of Recombinant DNA Techniques
Recombinant DNA technology
Material for Quiz 5 from Chapter 8
Relationship between Genotype and Phenotype
Presentation transcript:

What I’ve done this summer Institute of Molecular Biology – Academia Sinica Dr. Che-Kun James Shen 沈哲鯤博士 National Health Research Institutes Dr. Xin Chen 陳新博士 陳惠民 陳惠民

Recent Projects of Dr. Shen Brain cDNA Library Sequencing – –Sequencing of macaque’s brain cDNAs – –Compare macaque’s brain cDNAs with human’s. – –Expect to find some candidate genes which cause the “superiority” of humen over other primates. Brain asymmetrical gene expression – –Find some target genes which have notable different gene expression quantity between right and left brains of mice.

My work in Dr. Shen’s Lab Learned some concepts of PCR Preliminary screening for target genes derived from right and left brains of mice Qualitative RT-PCR

Introductions to Glycophorin Gene Family GPA, GPB and GPE are highly homologous and form a gene cluster on chromosome 4 ( q ). The antigens for the MNS blood group system are GPA and GPB. The existence of about 40 variant phenotypes of this blood group system has been documented by serological analyses.

Why Are We Interested in Glycophorin Gene Family ? The allelic diversity arises from unequal homologous crossing-over or gene conversions rather than point mutations. The incidence of the allelic diversity across the world appears to be characteristic of the ethnic or geographic origin of the subjects. The evolution of the three identified hot spots. Blood group antigen have become classic genetic markers in genetic population studies and in linkage analyses.

Methods PCR with glycophorin-specific primers Gel electrophoresis Vector-insert ligation Transformation Blue-white selection Colony PCR Plasmid DNA sequencing Data analyses

Results

My work in Dr. Chen’s Lab To learn how to determine the optimal condition for protein purification. Inoculation and incubation overnitht Induction ( Different Time, o C and [IPTG] ) Ultrasonication centrifucation SDS gel electrophoresis comassive blue staining

My work in Dr. Chen’s Lab ( Continued ) Plasmid construct for future work PCR for the target gene Use restriction enzymes to treat both inserts and vectors. ( Check the frame in advance. ) Ligation ( Check the insert-vector ratio. ) Transformation Use the same Restriction enzymes to check whether the insert is inside or not. Plasmid DNA sequencing