Introduction to Genomics BL 3300/FW 3300 Welcome Syllabus available at

Slides:



Advertisements
Similar presentations
SE – 323: METHODS ENGINEERING (TERM: 071 – 02) SYLLABUS Instructor: Dr. Tahir Ayar Building: 22 & Room: 345 Phone: 860 – 4958
Advertisements

Computers and Society Lecture 1: administrative details and an introduction to the class Professor: Evan Korth New York University.
CS/CMPE 535 – Machine Learning Outline. CS Machine Learning (Wi ) - Asim LUMS2 Description A course on the fundamentals of machine.
Welcome to Introduction to Java Programming At J.D.O’Bryant Science & Mathematics Chonho Lee Department of Computer Science University of Massachusetts.
WELCOME EFFECTIVE GRANTSMANSHIP WORKSHOP FW5850 CREDIT 1 Thursday 1.05 to 1.55 pm $$$$$$$$$$$$$$$$$$$$$$$
Introduction to Genomics BL 3300/FW 3300 Welcome.
Bio 328 Human Heredity Professor Debbi Morrissette Office Hours: Mon/Wed 9:15-9:45am Location: Sci2 Room 141.
Statistical Methods in Computer Science Course Introduction Ido Dagan.
WELCOME EFFECTIVE GRANTSMANSHIP WORKSHOP FW5850 CREDIT 3 Tuesdays and Thursdays 2.05 to 2.55 pm G002 Forestry $$$$$$$$$$$$$$$$$$$$$$$
Michelle Smith Instructor: Contact Information:
WELCOME EFFECTIVE GRANTSMANSHIP WORKSHOP FW5850 CREDIT 3 Mondays and Wednesdays 2.05 to 2.55 pm G002 Forestry $$$$$$$$$$$$$$$$$$$$$$$
Math 115a– Section 4  Instructor: Kerima Ratnayaka   Phone :  Office : MTL 124B.
Principles of Evolution Biology 3330 – Spring 2015 James F. Thompson, Ph.D.
1 SWE Introduction to Software Engineering Fall Semester (081) King Fahd University of Petroleum & Minerals Information & Computer Science.
ECS15: Introduction to Computers Fall 2013 Patrice Koehl
BIO337 Systems Biology/Bioinformatics (course # 50524) Spring 2014 Tues/Thurs 11 – 12:30 PM BUR 212 Edward Marcotte/Univ. of Texas/BIO337/Spring 2014.
METU Computer Engineering Department
Computer Science 102 Data Structures and Algorithms V Fall 2009 Lecture 1: administrative details Professor: Evan Korth New York University 1.
CS 450: COMPUTER GRAPHICS COURSE AND SYLLABUS OVERVIEW SPRING 2015 DR. MICHAEL J. REALE.
What is genomics? Study of genomes. What is the genome? Entire genetic compliment of an organism.
7-Sep-15 Physics 1 (Garcia) SJSU Conceptual Physics (Physics 1) Prof. Alejandro Garcia Spring 2007.
1 MSCS 237 Distributed Computing Spring 2006 INSTRUCTOR: Dr. Sheikh Iqbal Ahamed Office: Cudahy Hall 386 Phone: Office Hours: Monday 2:00-3:00pm.
Politics and the Media (POLS 328) Professor Jonathan Day 1.Introduction 2.Syllabus 3.Website 4.1 minute paper 5.First Reading.
International Student Orientation: Academic and Classroom Culture Sharon Salinger, Dean, Division of Undergraduate Education.
Introduction to Genomics BL 3300/FW 3300 Welcome.
BIOLOGY CP What topics will we be covering in this course?
Welcome to Biology 102! Please put away ALL electronics and pick up a syllabus (if you don’t have one yet) and a clicker at the front desk. You will need.
WEEK-1 PRINCIPLES OF MANAGEMENT BUSN 107, Özge Can.
CST 229 Introduction to Grammars Dr. Sherry Yang Room 213 (503)
Computer Science 10: Introduction to Computer Science Dr. Natalie Linnell with credit to Cay Horstmann and Marty Stepp.
ELECTROCHEMISTRY (CHEM 4700) Section 01 (CRN 25511) MWF 11: :50 am (LAB 107) DR. AUGUSTINE OFORI AGYEMAN Assistant professor of chemistry Department.
CS355 Advanced Computer Architecture Fatima Khan Prince Sultan University, College for Women.
Computers and Society Lecture 1: administrative details and an introduction to the class Professor: Evan Korth New York University.
Computer Science 102 Data Structures and Algorithms CSCI-UA.0102 Fall 2012 Lecture 1: administrative details Professor: Evan Korth New York University.
EE210 Digital Electronics Introductory Class January 26, 2009.
Principles of Chemistry II (CHEM 1212) Section 01 (CRN 53642) MW 3:30 - 5:35 pm (B10) DR. AUGUSTINE OFORI AGYEMAN Assistant professor of chemistry Department.
CGS 1000-FALL 2009 Intro to Computers & Tech. Topics  Syllabus  Faculty Website  Campus Cruiser Introduction to Computers and Technology.
Fall 2o12 – August 27, CMPSC 202 First Day Handouts  Syllabus  Student Info  Fill out, include all classes and standard appointments  Return.
Math 115b Section 3 (Spring 09)  Instructor: Kerima Ratnayaka   Phone :  Office.
Lecture Section 001 Spring 2008 Mike O’Dell CSE 1301 Computer Literacy.
MRKT 370 – PRINCIPLES OF MARKETING FALL 2003 Dr. Ugur Yucelt Office Phone: Class Time: MW: 12:30-1:45 Office hours: MW:2:00-6:00 pm
Overview of Bioinformatics 1 Module Denis Manley..
AdvancedBioinformatics Biostatistics & Medical Informatics 776 Computer Sciences 776 Spring 2002 Mark Craven Dept. of Biostatistics & Medical Informatics.
ICS202 Data Structures King Fahd University of Petroleum & Minerals College of Computer Science & Engineering Information & Computer Science Department.
CEN First Lecture CEN 4010 Introduction to Software Engineering Instructor: Masoud Sadjadi
EDUCATIONAL PSYCHOLOGY and MEASUREMENT EDU Spring 2012 Dr. Susan Barfield.
Friday, January 08, 2016Friday, January 08, 2016Friday, January 08, 2016Friday, January 08, 2016printing Syllabus CJ 477 – Special Topics in Criminal.
MMU 209 INTRODUCTION TO MATERIALS SCIENCE AND ENGINEERING COURSE TIME AND VENUE: TUESDAY: (B202) WEDNESDAY: (B312) Lecturer: Assist.
EECS 110: Introduction to Programming for Non-Majors Aleksandar Kuzmanovic Northwestern University
Data Structures and Algorithms in Java AlaaEddin 2012.
This will be an interactive class, prepare to participate!!!
COP4020 INTRODUCTION FALL COURSE DESCRIPTION Programming Languages introduces the fundamentals of the design and implementation of programming languages.
08/29/2006 Introduction INTRODUCTION Instructor: Petru S. Fodor Class webpage: PHYSICS 243H.
Math 115b Section 18 & 20 (Fall 2010)  Instructor: Kerima Ratnayaka   Phone : 
FEDERAL TAX AB256 Professor Ron Hathaway. WELCOME Introductions contact information: Ron Hathaway (c) AIM: DiverRescue4.
BCH339N Systems Biology/Bioinformatics (course # 54040) Spring 2016 Tues/Thurs 11 – 12:30 PM BUR 212.
Course Overview Stephen M. Thebaut, Ph.D. University of Florida Software Engineering.
55-213: Introductory Molecular Biology Professor : Dr. Andrew Hubberstey Office: Biology Building room please use CLEW site! Office Hours: Wednesdays.
Course Overview 1 MAT 279 Data Communication and the Internet Prof. Shamik Sengupta Office 4210 N
Michelle Smith Instructor: Contact Information:
Economics 175 American Economic History
BIOLOGY 100 Human Biology Summer 2017.
Theory and Practice of Web Technology
BIOLOGY 100 Human Biology Fall 2017.
Computer Science 102 Data Structures CSCI-UA
BIOLOGY 100 Human Biology Spring 2017.
Welcome to Biology 101! Please pick up a syllabus (if you don’t have one yet) and a clicker at the front desk. You will need to rent a clicker from.
Genomics, Proteomics & Bioinformatics
Accelerated Introduction to Computer Science
Term Dr Abdelhafid Bouhraoua
Presentation transcript:

Introduction to Genomics BL 3300/FW 3300 Welcome Syllabus available at

Who is your instructor? Shekhar Joshi (Chandrashekhar P. Joshi) Dr. Joshi Professor of Plant Molecular Genetics, SFRES Over 20 years of research experience –Molecular Genetics, Biotechnology, Bioinformatics 45 papers, 16 book chapters,80 presentations Teaching molecular genetics at MTU since 1998 This class is offered since 2001.

Where and when can you find me? Room # 168, Forestry Building Office Hours: I am generally available between 9 am to 6 pm on all weekdays except –MWF between 3-4 pm when I teach this BL3300/FW3300 class (better to take my appointment). Phone: Web site: For those who walk up from the main campus: Do call me or me before walking up the hill to meet me!

Why was this course proposed? Genomics is the study of genome structure and function. This is a new and exciting area that has recently witnessed many conceptual and technical advances. This information is vital to our day-to-day living in this century. Such a course would also make our students competitive in current job market Bioinformatics majors needed this type of class and now all molecular biology major students will need this class too.

Course Description The main purpose of this course is to introduce concepts of human genomics that can also be applied to microbial, plant and animal genomes. The topics covered are: Genes and genome organization Genome mapping DNA fingerprinting Gene tagging Bioinformatics Legal and Ethical aspects of genomics Genome evolution

Essential Details Credits: 3 Time: Monday, Wednesday and Friday 3 pm-4 pm Place: Forestry G002 Class Paper: –Genomics meets Hollywood! (more on this later) Note: Class paper presentations will be held between December 8th and 12th, 2008.

Required Text Book Genomics –Philip N. Benfey and Alexander D. Protopapas (Pearson Prentice Hall) (For 2006 updates go to –Recent book –Up to date –Real genomics book –Ready made slides and space for notes –Updates available

Additional Reading Optional Reading material (No need to buy it) Genomes by T.A. Brown, 1999, John Wiley & Sons, NY Genes VIII by Benjamin Lewin, 2003, Oxford University Press Molecular Biology by Robert F. Weaver, 1999, McGraw-Hill Press Genome by Matt Ridley, Harper Collins, 2000

Grades Grading Point System A 94-90AB 89-85B 84-80BC 79-75C 74-70CD 69-60D < 59F Course point distribution Class participation10% (attendance and attention) Home work, quizzes etc20% Class paper10% (essay and Powerpoint presentation) Mid-term exam30% (October 27th or 29th, 2008) Final exam30% (during December 15-19, 2008)

Class paper Each discussion group will consist of four-five students (you form your own group) Each of you will see a movie that uses DNA, genes, genomics or genetic engineering as a theme (e.g. Jurassic park) and write a 3-5 page overview of that movie and submit to me electronically by November 7, You will discuss the movie that you selected with the group You ALL will select one movie that you want to present to the class and one of you will present it Tell the class about your movie selection: its main theme, the plot and how it fits with the topic of the class. Provide your interpretations about accuracies and discrepancies of science depicted in those movies. If you were the writer/director, how would you improve it to portray the science more accurately (but not making it a complete flop) One representative per group will present a 10 minute powerpoint talk sometime between December 8-12, Questions?

University Policies /policies.html or student handbookhttp:// /policies.html –Academic Integrity: plagiarism –Attendance Policy: me if absent –Code of Conduct: follow the laws of the land –Computer Use Policy: use responsibly Please visit this site and make sure that all your actions in the class are within the bounds of these policies.

Class coverage Chapter 1: Introduction Chapter 2: Technical Foundations of Genomics Chapter 3: Fundamentals of Genome Mapping and Sequencing Chapter 4: Genome sequencing Chapter 5: RNA expression analysis Chapter 6: The Computational Foundations of Genomics Chapter 7: High-Throughput Genetics Chapter 8: Proteomics Chapter 13: The Structure of Genomes Chapter 15: Genomics and Medicine Chapter 19: Genomics and Agriculture Chapter 20: Ethical issues of genomics

BL4400/FW4400?? (Spring) Advanced genomics Remaining chapters of this book plus Sequenced genomes and what we learnt Future of genomics

What is genomics? Study of genomes

What is the genome? Entire genetic compliment of an organism

How many types of genomes exist? Prokaryotic genomes Eukaryotic Genomes Nuclear Genomes Mitochondrial genomes Choloroplast genomes

Why we should study genomes? Life’s little book of instructions DNA blue print of life! Human body has cells and each cell has 6 billion base pairs (A, C, G, T) A hidden language determines which proteins should be made and when This language is common to all organisms

What can genome sequence tell us? Everything about organism's life Its developmental program Disease resistance or susceptibility History Where you are going?

How are human genomes organized? 3% coding and rest of it junk (repetitive DNA). Nuclear and mitochondrial You are 99.99% similar to your neighbor

Why human genome? We want to know about ourselves How do we develop? How do we struggle, survive and die? Where are we going and where we came from? How similar are we to apes, trees, and yeast?

How will we change in this century because of the Genomics? You will control the destiny of this planet Big changes in our life Biotechnology: more products GMOs: More food-More problems? Our society will not be the same! Individualized medicine Gene therapy Immortality? Disease free life?

Are we playing GOD? Central dogma in Molecular Biology