GIS at SDSC Domains: –From geology, environmental science, hydrology, ocean biodiversity, regional development, Katrina response, archaeology, to neuroscience.

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Presentation transcript:

GIS at SDSC Domains: –From geology, environmental science, hydrology, ocean biodiversity, regional development, Katrina response, archaeology, to neuroscience and ophthalmology. All levels of infrastructure: –Spatial databases (Oracle, MySQL, Postgres/PostGIS, ArcSDE) –Spatial servers (ArcGIS Server, ArcIMS, WMS/WFS servers) –Spatial web services, incl. spatial information integration –Client applications: COTS, open source, mashups, in-house Novel approaches: –Map assembly services –Ontology-aware spatial query processing –Distributed spatial data querying using mediators –Wrappers for spatial data sources of different type –XML-based vector mapping –Portal integration –SOA integration, sensor data management –Long-term spatial data preservation Collaborations: –Industrial partners (ESRI), associations (OGC), government agencies (USGS, EPA, NCDC, etc.) GIS-related funding: NSF, NIH, NIEHS, NARA, ESRI Classes and short courses taught: from archaeology to medical sciences

WaterOneFlow Web Services Data accessthrough web services Data storage through web services Downloads Uploads Observatory servers Workgroup HIS SDSC HIS servers 3 rd party servers e.g. USGS, NCDC GIS Matlab IDL Splus, R D2K, I2K Programming (Fortran, C, VB) Web services interface DASH: Data Access System for Hydrology Information input, display, query and output services Preliminary data exploration and discovery. See what is available and perform exploratory analyses HTML -XML WSDL - SOAP Hydrologic Information System Service Oriented Architecture

DASH AGS Server IIS Windows 2003 Server 4 GB Ram 1 TB Disk Quad Core CPU SQL Server VS 2005 WaterOneFlow Web Services ArcGIS 9.2 GIS Data Mxd Service ODM LoaderODM tools ODM Workgroup HIS Server: Current Deployment Architecture Direct DB connection The servers are configured at SDSC with GIS software and databases, and shipped to WATERS test bed sites

Spatial Queries on Brain Structures, including 3D queries The Smart Atlas: Spatial Integration over Distributed Data WebStart from BIRN portal

Spatial integration of distributed multiscale data The new version of the S.M.A.R.T. Brain Atlas is a MapObjects-Java based Web application for ontology- aware discovery and integration of distributed multiscale brain data registered to the common stereotaxic coordinate system.

Spatial sources and requests 1: getSources ({slice_plane_params, 2Dshape}, sp_rel) 2: getFragment(URI,plane_params,2Dshape,image_dims) BIRN-CC infrastructure

Impact

ESRI Health Sciences Brochure Presented at several GIS conferences: keynote at International Health GIS, 2004; Part of ESRI’s President’s address at GIS User Conference (2003), other…

The STARE (Structural Analysis of the Retina) project, UCSD Foveal Coordinate System Background Coordinate System Veins Arteries Optic nerve Fovea Cotton-Wool Hemorrhages

Drinking water surface intakes and TRI facilities Now at: NIEHS Hurricane Katrina Response Portal

Data download and metadata are available for all spatial layers

Infrastructure and Architecture: Overview User Interface Grid Middleware / Cyberinfrastructure Physical Resources and Data Grid Middleware/Cyberinfrastructure Provides Security, Identity Mapping, and Resource Access/Abstraction Between Shared Resources Within and Between Virtual Organizations

SAN DIEGO SUPERCOMPUTER CENTER, UCSD SciR&D SDSC Spatial Information Systems Lab Research and system development Services-based spatial information integration infrastructure Mediation services for spatial data, query processing, map assembly services Long-term spatial data preservation Spatial data standards and technologies for online mapping (SVG, WMS/WFS) Support of spatial data projects at SDSC and beyond services In Geosciences (GEON, CUAHSI, CBEO,…) In regional development (NIEHS SBRP, Katrina) In Neurosciences (BIRN, CCDB)