EDF and EDF+ Bob Kemp Leiden University, Neurology Westeinde Hospital, Sleep Centre

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Presentation transcript:

EDF and EDF+ Bob Kemp Leiden University, Neurology Westeinde Hospital, Sleep Centre

EDF 3-page specification, 1992 (handout) Biosignals, and analyses like deltaplots Mainly used for PSG and EEG 50 companies, many researchers

EDF+ 7-page specification, 2003 (handout) EDF+: better EDF plus annotations, events Used for PSG, EEG, EP, EMG, Actigraphy, Sleep stages, Apnea’s, Cardiology Software and recordings available

The EDF / EDF+ file General headerASCII characters version of this data format (still 0) 8 patient identification (de-identification here)80 recording identification80 startdate of the recording, like starttime of the recording, like technical checksum8 reserved44 number of data records with PSG signals8 duration of each data record8 number of signals4 Signals header, for each signalASCII characters signal label, like EEG C3-A216 transducertype, like AgAgCl electrode80 physical dimension, like uV8 amplitude calibration (offset and gain)32 prefiltering80 sampling frequency8 reserved32 Data records16-bit integers samples of signal[1] samples of signal [2] …

EDF+ is more rigid than EDF patient ID: HospitalCode | Sex | Birthdate | Name record ID: Date | Investigation | Investigator | Equipment signal label : like "EEG C3-A2" or "SaO2" dimension: like "uV" or “mV” or "%"

EDF+ extra’s Annotations Interrupted recordings in one file (EP, EMG, MSLT) Standard filenames for PSGs, deltaplots, sleep scores,.. Compression of floats (0.5% accuracy)

EDF+ Annotations The “Annotations signal” has text, not integers Text: Starttime | Duration | Annotation Any language (UCS), for example | 32.2 | ¥€$ Pre-defined standard texts for Sleep scoring. Applications: Free text, Sleep scores, QRS parameters, Stimuli, Events, …

EDF / EDF+ compatibility EDF software reads EDF+, except events EDF+ software reads EDF

Conference checklist: EDF+ One recording file. Analysis-filename standard. Fixed Patient information, linked to Hospital ID. Easy de-identification (beware annotations). Sampling freq, bits, events: yes, [yes/no], yes Events: any, new, [linked to channel,] overlapping. No referencing between events. % SaO2, kPa pressure go in EDF and EDF+ AHI, TST go in EDF+.

Lists of Companies Specifications Developers Programming guidelines Free downloads EDF checker EDF(+) viewer PSG’s (Physionet) EMG, EP, EEG,.. Calibration test

EDF(+) companies

EDF checker

EDF(+) viewer

We need a common data format PSG archive independent from manufacturer PSG analyser independent from PSG recorder best analyzer and best recorder one software for all recorders multicenter trials with central scoring inter-laboratory collaboration Compatibility with EEG and Psychometry

We need a simple data format Small companies, limited capacity Research groups, limited capacity Implementing simple EDF has enough bugs