Chapter 17 AP Biology From Gene to Protein

Central Dogma of Molecular Biology DNA  RNA Protein

What is RNA? Contains the bases A, C, G, and U instead of T single-stranded (often folds onto itself) Three types of RNA: messenger RNA (mRNA), transfer RNA (tRNA) and ribosomal RNA (rRNA)

Protein Synthesis DNA  RNA  Protein 1. Transcription - DNA message is transcribed into mRNA and sent to ribosomes. 2. Translation - mRNA is translated into a Protein by a ribosome. DNA  RNA  Protein

Overview – Eukaryotic Cell Notice that transcription and translation occur in different places in a eukaryotic cell.

Overview – Prokaryotic Cell

The Triplet Code Note that the bases of mRNA are complementary to the template strand of DNA The bases of mRNA are read in groups of three – each group is called a codon

From mRNA to Amino Acids The mRNA base triplets are called codons mRNA is written in the 5’ to 3’ direction The codons code for each of the 20 amino acids The genetic code is redundant More than one codon codes for each of the 20 amino acids

The Genetic Code The three bases of an mRNA codon code for the 20 amino acids that are the subunits of proteins The amino acids are designated by three letters

Universal Nature of the Genetic Code

Transcription Promoter The DNA sequence at which RNA polymerase attaches is called the promoter RNA polymerase adds RNA nucleotides to a growing RNA strand in the 5’  3’ direction

Transcription Unit The entire stretch of DNA that is transcribed into an RNA molecule A transcription unit may code for a polypeptide or an RNA (like tRNA or rRNA) RNA Polymerase II makes mRNA

Terminator The DNA sequence that signals the end of transcription is called the terminator

Stages of Transcription 1. Initiation 2. Elongation 3. Termination

Initiation of Transcription at a Eukaryotic Promoter

RNA Processing In eukaryotes, transcription results in pre-mRNA Pre-mRNA undergoes processing to yield final mRNA which leaves the nucleus and goes to the ribosomes In prokaryotes transcription results in mRNA Processing of mRNA does not occur in prokaryotes Transcription and translation can occur simultaneously

Processing of Pre-mRNA Addition of a 5’ cap A modified form of a guanine nucleotide Addition of a poly-A tail 50-250 adenine (A) nucleotides are added This is referred to as the poly-A tail RNA splicing Editing of the initial strand of mRNA (a cut and paste job)

Addition of 5’ cap and poly-A tail

5’ cap and poly-A tail Both facilitate export of mRNA from the nucleus Both help protect mRNA from degradation by enzymes Both facilitate the attachment of mRNA to the ribosome

RNA Splicing Only takes place in eukaryotic cells Large sections are spliced out; these are called introns The sections that remain are called exons “exons EXIT the nucleus” These exons are spliced together by a spliceosome to form the mRNA that leaves the nucleus and travels to the ribosomes

RNA Splicing

snRNPs and Spliceosomes Small nuclear RNAs (snRNA) and small nuclear ribonucleoproteins (snRNPs) serve a catalytic function in the spliceosome When RNA acts as a catalyst, it is called a ribozyme

Alternative RNA Splicing Different regulatory proteins in different cells splice the pre-mRNA in different ways This is called alternative gene splicing This allows for different combinations of exons This results in more than one polypeptide per gene This explains why we have fewer genes in our genome than what was expected

Transcription Animation https://www.youtube.com/watch?v=SMtWvDbfHLo

17.4 Translation tRNA functions in transferring amino acids from the cytoplasm to a ribosome rRNA complexes with proteins to form the two subunits that make up ribosomes

tRNA Each type of tRNA is specific for a particular amino acid At one end tRNA loosely binds the amino acid and at the other end it has a nucleotide triplet called the anticodon The anticodon allows it to pair specifically with a complementary codon on mRNA

Structure of tRNA

Basic Concept of Translation Codons are the triplet nucleotides on mRNA Anticodons are the triplet nucleotides on tRNA

Wobble If one tRNA variety existed for each codon, there would need to be 61 tRNAs, there are only about 45, some can bind to more than codon The rule for base pairing is not as strict between the third base of a codon and an anticodon, this relaxation of base-pairing rules is called wobble Ex: a tRNA with the anticodon 3’-UCU-5’ can base pair with either the mRNA codon 5’-AGA-3’ or 5’-AGG-3’, both code for Arg

Three Stages of Translation Initiation Begins with the start codon AUG (always!) Elongation Codon recognition Peptide bond formation (between 2 a.a.) Termination A stop codon is reached and translation stops

Initiation

Elongation

Termination

Translation Animation https://www.youtube.com/watch?v=TfYf_rPWUdY

Folding of the Polypeptide Following release from the ribosome, the polypeptide then folds to its specific conformation Chaperonins are the proteins that help with this folding process The first 20 amino acids of the polypeptide serve as a signal peptide and act as a cellular zip code, directing the polypeptide to its final destination

Targeting Proteins to the ER

17.5 Point Mutations Mutations are alterations in the genetic material of the cell caused by mutagens Point mutations are alterations of just 1 base pair in a gene Base-pair substitution Silent mutations – have no effect on the encoded protein Missense mutations – change one amino acid to another; might still code for the correct amino acid Nonsense mutations – change a regular amino acid codon into a stop codon Insertions & deletions Frameshift mutation – mRNA is read incorrectly

A Point Mutation Disorder

Base-Pair Substitution - Silent

Base-Pair Substitution - Missense

Base-Pair Substitution - Nonsense

Frameshift Mutation- Insertion

Frameshift Mutation - Deletion