Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Lipidomics.

Slides:



Advertisements
Similar presentations
Modified 3-pH Bligh-Dyer Extraction for Comprehensive Metabolomics of Tissue and Cell Culture Samples: Notes: 1.Alternatively, for softer tissues, like.
Advertisements

Lipids Introduction and classification
15.5 Phospholipids The phospholipids are a family of lipids similar in structure to triacylglycerols; they include glycerophospholipids and sphingomyelin.
Chromatography CHEMISTRY Chromatography Chromatography is a technique for separating species based on physical or chemical properties. Usually.
Analysing the METABOLOME 1.Metabolite Extraction 2.Metabolite Separation 3.Metabolite detection (with or without separation) 4.Data analysis.
Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Label Free Quantitative Proteomics “biomarker discovery”
An introduction to chromatography. To identify the compounds of a mixture = qualitative analysis To quantify these compounds To retrieve the separated.
The Plasma Membrane Section 7.2.
Substrates for lipid synthesis Phosphatidate is a precursor of storage and membrane lipids Formed by the addition of two fatty acids to glycerol 3-phosphate.
Chapter Glycerophospholipids
The Plasma Membrane - Gateway to the Cell
Karaganda State Medical University. Chemistry department.
Mass-Spectrometric Analysis of Lipids (Lipidomics) 1. Identification 2. Quantification 3. Metabolism.
Content fats and lipids structure and properties of phospholipids glycolipids steroids.
Lipid metabolism By Dr. Hoda Gad. OBJECTIVES BY THE END OF THESE LECTURES, STUDENT SHOULD BE ABLE TO:  Understand the structure of lipids including 
Cells have different lipids; Why? How? Lipidomics 30% of the cellular proteins are membrane proteins Proteomics How do cells use proteins and.
Lipid. The function of lipid Lipids are a class of biological molecules defined by low solubility in water and high solubility in nonpolar solvents. Function:
Chapter 23 Lipids Created By Prof. Gary F. Porter, Ph.D. Copyright © 2014 by John Wiley & Sons, Inc. All rights reserved.
Triacylglycerol Synthesis
Red cell membrane Dr. Suhair Abbas Ahmed. objectives  After studying this lecture you should be able to: 1-List the main functions of the red cell membrane.
Basic Biochemistry: Lipid Structure Dr. Kamal D. Mehta Department of Molecular & Cellular Biochemistry Wexner Medical Center at the Ohio State University.
L I P I D S II. Simple Lipids Neutral fats and oils Monoacyl glycerols (monoglycerides) Diacyl glycerols (diglycerides) Triacyl glycerols (triglycerides)
Biological Lipids and Bilayers Lipids are nearly insoluble in Water –Form Biological membranes –Regulate solute flow and signalling –Provide concentrated.
By: Halie Derr Nick Splitt
17.5 Glycerophospholipids
Chap. 10. Problem 2. Part (a). The melting points of fatty acids are strongly influenced by the number of cis double bonds present in the fatty acid acyl.
Metabolomics and analytical chemistry: GC & GCMS Simone Bossi Analytical Chemistry Lab – Plant Physiology – Plant Biology.
Chapter 9 - Lipids and Membranes Lipids are essential components of all living organisms Lipids are water insoluble organic compounds They are hydrophobic.
The Phospholipid molecule Hydrophilic – “water loving” Hydrophobic – “water fearing” Draw and label this: title:
Lipids-I BCH 302 [practical].
Phospholipid A phospholipid is a type of lipid used in the cells of living things.
Complex Lipids Sections By: Cassie Webb and Alyssa Keifer.
بسم الله الرحمن الرحيم.
Chapter 10.2: Membrane Lipids CHEM 7784 Biochemistry Professor Bensley.
COMPLEX LIPIDS. WHAT ARE COMPLEX LIPIDS Help to create the main components of membranes AKA compound lipids Complex lipids can be classified.
General, Organic, and Biological Chemistry Copyright © 2010 Pearson Education, Inc.1 Chapter 17 Lipids 17.8 Cell Membranes.
What is a membrane? A water-induced structure composed of a lipid bilayer and integral and peripheral proteins A water-induced structure composed of a.
3.1 Significance 2 major functions of lipids – Energy storage by nonpolar lipids – Membrane function by polar lipids Also form micelles Signal molecules.
Sphingolipids Dr. Abir Alghanouchi Biochemistry department
A B C Embryo L4 larvae AL DR TAG PC
THERE ARE TWO CLASSES OF PHOSPHOLIPIDS:
17.5 Phospholipids Phospholipids are a family of lipids similar in structure to triacylglycerols; they include glycerophospholipids and sphingomyelin.
Sample Problem 17.1 Structures and Properties of Fatty Acids
A b b a a a a a a c a a b a a b a,b a,c a B c b,c a a,c a,c c a b,c b
Glycerophospholipids
Perilipin 5 is protective in the ischemic heart
LIPID SYNTHESIS.
Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Metabolomics.
Bronchoalveolar Lavage in Liquid Paraffin Pneumonitis
Sin Man Lam, Yuting Wang, Xinrui Duan, Markus R. Wenk, Raj N
Sin Man Lam, Yuting Wang, Xinrui Duan, Markus R. Wenk, Raj N
Supplementary figure S1
Lipids and the Cell Membrane
Graded presentation Students in groups of 4-5 individuals are asked to prepare a presentation (weight=5% of the theoretical course assessment) during the.
Perilipin 5 is protective in the ischemic heart
Volume 24, Issue 3, Pages (July 2018)
Catabolisms of triacylglycerols and phospholipids.
Figure 18.1 Stereospecific numbering of glycerol.
Figure Number: 26-00CO 26-00CO Title: Stearic and Linoleic Acids
Nat. Rev. Endocrinol. doi: /nrendo
Electron micrograph of a fat cell
Chapter 2: Chemical Composition of the Body (Review).
Lipids Dr. Tarek Zaida.
Lipids-I.
17.5 Glycerophospholipids
Vitamin C Stimulates Sphingolipid Production and Markers of Barrier Formation in Submerged Human Keratinocyte Cultures  Yoshikazu Uchida, Martin Behne,
Figure 1 Glycerophospholipid classes and subclasses
Phospholipids of clinical significance
Glycerophospholipids and related metabolites are differentially expressed in sera from patients with RA before (A) and after (B) treatment with rituximab.
Presentation transcript:

Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Lipidomics

Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Same principle as the proteomic mass spectral method Urine/plasma/CSF injected into a UPLC QTOF mass spectrometer  lipids separated by UPC 2 chromatography (supercritical fluid chromatography)  Uses CO 2 to separate lipids out according to their polar properties not non-polar (reverse phase)  Lipids are easier to identify than metabolites as they have been more extensively studied C24 C20 C18 C16 C14 C12 C10 C8 C22 Free fatty acids

Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Same principle as the proteomic mass spectral method Urine/plasma/CSF injected into a UPLC QTOF mass spectrometer  lipids separated by UPC 2 chromatography (supercritical fluid chromatography)  Uses CO 2 to separate lipids out according to their polar properties not non-polar (reverse phase)  Lipids are easier to identify than metabolites as they have been more extensively studied Triacylglycerols Chosteryl esters ( Mixture of FFA, TAG, and CE

Proteomic, Metabolomic and Lipidomic Research Capability at ICH and ION UCL Phospholipid analyses from human heart Sphingomyelin Phosphatidylglycerol ceramides Phosphatidylethanolamine Lyso-phosphatidyl- ethanolamine Phosphatidylcholine Lyso phosphatidyl choline Phosphatidylcholine C34:0 C36:0 C38:3 C36:1 C36:3 C32:0 C30:1