Desirable Clinical Terminology Characteristics and Present Adherence James J. Cimino.

Slides:



Advertisements
Similar presentations
Technical Writing Eric Adams James Paradis, MIT Writing Program Concepts of Engineering Practice September 2003.
Advertisements

Protocol Author Process People Technology
Panel 3: What level of data granularity, common standards, lexicon elements, and definitions need to be developed by the health system community to meet.
1 Importance of Standardized Terminology in Healthcare Information Systems Judith J. Warren, PhD, RN, BC, FAAN, FACMI Christine A. Hartley Centennial Professor.
Continuity Clinic Coding Patient Encounters EPISODE 1 Concepts.
Controlled Medical Nomenclature for NAHLN NAHLN January 2005 Las Vegas, NV.
Medical Record Abstract Workshop Nov 16, Why are we here? VMDB success requires “harmony” Sophisticated veterinary medical records need a capable.
Inheritance “a mechanism for propagating properties (attributes & methods) of superclasses to subclasses.”
The Future of NDC: The HL7 Perspective James J. Cimino, M.D. Co-chair, HL7 Vocabulary Technical Committee Departments of Medicine and Medical Informatics.
1 Ontology in 15 Minutes Barry Smith. 2 Main obstacle to integrating genetic and EHR data No facility for dealing with time and instances (particulars)
Coping with Changing Controlled Vocabularies James J. Cimino, M.D. Paul D. Clayton, Ph.D. Department of Medical Informatics Columbia University.
Desiderata for Controlled Medical Vocabularies James J. Cimino.
The Promise of Pathology Informatics James J. Cimino, M.D. Department of Medical Informatics Columbia University.
Chapter 5 Normalization of Database Tables
Database Systems: Design, Implementation, and Management Eighth Edition Chapter 5 Normalization of Database Tables.
Clinical Vocabularies James J. Cimino, M.D. Columbia University.
New Desiderata for Biomedical Terminologies Discussant: James J. Cimino Columbia University.
The Medical Entities Dictionary - © James J. Cimino Intelligent Terminologies to Support System Interfaces: The Medical Entities Dictionary Presentation.
Managing Data for Clinical Care Delivery and Research Getting More Bang For Your Buck Standards & Terminologies James J. Cimino, M.D. Columbia University.
Copyright © 2001 College of American Pathologists Sample Hierarchy for Hepatitis Chronic viral hepatitis Chronic viral hepatitis C About SNOMED Relationships.
PRD_codes_KS_ ppx. UK Renal SNOMED CT subset incorporating the new ERA-EDTA PRDs and how we can use them in Rare Disease Groups Keith Simpson.
THINKING POWER. Objectives 1.Define critical thinking. 2.State how critical thinking is essential to nursing practice. 3.Identify strategies that will.
Computer Science 340 Software Design & Testing Design By Contract.
CS 8532: Adv. Software Eng. – Spring 2007 Dr. Hisham Haddad Tuesday Class will start momentarily. Please Stand By … CS 8532: Advanced Software.
Veterinary Terminology Services Lab Va-Md Regional College of Veterinary Medicine The Animal Names Terminology Subset of SNOMED CT ® Suzanne L. Santamaria,
Database Management System Lecture 6 The Relational Database Model – Keys, Integrity Rules.
The Structured Specification. Why a Structured Specification? System analyst communicates the user requirements to the designer with a document called.
Condition/Diagnosis/Health Issue/Problems/Findings Modeling Options.
10th Intl. Protégé Conference - July 15-18, Budapest, Hungary Do ontologies work? Barriers and Possibilities to Implement Ontologies in (Health)
Testing Basics of Testing Presented by: Vijay.C.G – Glister Tech.
Copyright © 2001 College of American Pathologists Sample Hierarchy for Tularemia Disorder Zoonotic bacterial disease Enteric tularemia Glandular tularemia.
Medical Documentation Rules. Medical Documentation Rules General principles The documentation of each patient encounter should include: Chief complaint.
Definition of a taxonomy “System for naming and organizing things into groups that share similar characteristics” Taxonomy Architectures Applications.
Electronic Scriptorium, Ltd. AIIM Minnesota Chapter Metadata and Taxonomy Presentation Copyright Electronic Scriptorium, Ltd. All rights reserved, 1991.
This material was developed by Duke University, funded by the Department of Health and Human Services, Office of the National Coordinator for Health Information.
Copyright © 2001 College of American Pathologists Sample Hierarchy for Blood Vessel Injury to the Leg Injury of blood vessels at ankle and foot level Popliteal.
Ontologies Come of Age Deborah L. McGuinness Stanford University “The Semantic Web: Why, What, and How, MIT Press, 2001” Presented by Jungyeon, Yang.
1 What is OO Design? OO Design is a process of invention, where developers create the abstractions necessary to meet the system’s requirements OO Design.
Review of Infoway’s COPD* Use Case for Care Plan Business Requirements Sasha Bojicic, Canada Health Infoway Ron Parker, Canada Health Infoway
M E D I N F O '9 5 ADVANCED PATIENT INFORMATION SYSTEMS AND MEDICAL CONCEPT REPRESENTATION MEDINFO’95 WORKSHOP.
Oreste Signore- Quality/1 Amman, December 2006 Standards for quality of cultural websites Ministerial NEtwoRk for Valorising Activities in digitisation.
Copyright ©2004 Virtusa Corporation | CONFIDENTIAL Requirement Engineering Virtusa Training Group 2004 Trainer: Ojitha Kumanayaka Duration : 1 hour.
RE-ENGINEERING AND DOMAIN ANALYSIS BY- NISHANTH TIRUVAIPATI.
Formal Specification: a Roadmap Axel van Lamsweerde published on ICSE (International Conference on Software Engineering) Jing Ai 10/28/2003.
Approach to building ontologies A high-level view Chris Wroe.
17 April 2005Sharif University of Tech Page 1 Ontologies Come of Age Amir Hossein Assiaee
Chapter:18 ADVANCED TERMINOLOGY SYSTEMS OBJECTIVES:  Describe the need for advanced terminology system.  Identify the components of advanced terminology.
Health IT Workforce Curriculum Version 1.0 Fall Networking and Health Information Exchange Unit 4a Basic Health Data Standards Component 9/Unit.
The New Subject Coding Scheme project Alan Paull (APS Ltd, working with CETIS)
Chapter 6 Building Vocabulary This multimedia product and its contents are protected under copyright law. The following are prohibited by law: –any public.
Finding Content in SNOMED CT Jo Oakes – Knowledge & Information Manager.
SNOMED-CT Vocabulary Standard (Certification) Review Final Recommendations VCDE-WS bi-monthly meeting | 2 Oct 2008 Review Team: Christopher Chute Brian.
Essential SNOMED. Simplifying S-CT. Supporting integration with health
Chapter 3 – Describing Syntax CSCE 343. Syntax vs. Semantics Syntax: The form or structure of the expressions, statements, and program units. Semantics:
SNOMED CT and Surgical Pathology
Agenda Preliminaries Motivation and Research questions Exploring GLL
SNOMED CT and Surgical Pathology
The Needs for Coding and Classification Systems
Standardized Terminologies and Vocabularies in Nursing
Controlled Medical Nomenclature for NAHLN
Ontology in 15 Minutes Barry Smith.
PURPOSE/FOCUS/ORGANIZATION
PURPOSE/FOCUS/ORGANIZATION
Architecture for ICD 11 and SNOMED CT Harmonization
Desiderata for Controlled Medical Vocabularies in the Twenty-First Century James J. Cimino.
Department of Medical Informatics
CS 8532: Advanced Software Engineering
Ontology in 15 Minutes Barry Smith.
Computer Science 340 Software Design & Testing
Presentation transcript:

Desirable Clinical Terminology Characteristics and Present Adherence James J. Cimino

Defining the Need for a Controlled Vocabulary Recording primary clinical information Multipurpose (re-use) Sharing data Maintenance

1: Content Must seek to be provide breadth and depth Atoms versus molecules A formal methodology is needed Structure must not limit size

2: Concept Orientation Concepts, not terms One meaning (nonvague) No more than one meaning (nonambiguous) Higher-level  ambiguous One concept per meaning (nonredundant) May have multiple context-dependent meanings

3: Concept Permanence Old concepts can't be deleted Example: non-A-non-B hepatitis Names can be changed as long as meaning doesn't change (retronyms) Example: transvenous pacemaker

4: Nonsemantic Concept Identifiers Don't use the name Don't use a code that will run out of room Don't use a hierarchical code Meaningless integer (+/- check digit)

5: Polyhierarchy Needed for tree walking Needed for inferencing Needed for "essence" Example: diseases of the liver which also involve the kidney

6: Formal Definitions Support understanding Support maintenance Structured and controlled (not narrative) Represented through relationships within the vocabulary Defintional versus assertional knowledge Additional effort minimal and will pay off

NEC

7: Reject "Not Elsewhere Classified" Can never have a formal definition Vocabulary changes induce semantic drift

8: Multiple Granularities Different levels for different purposes Uncertainty is allowed, imprecision is not We must be precise about our uncertainty

9: Multiple Consistent Views Multiple views for multiple purposes Must not lead to inconsistency

A B C D E F H G I

A B C D E F H G I A B C D E F (G,H) (I)

A D E F H G I A B C D E F H G I

A B C D E F H G I A B C D E F H G I

A B C D F I E H G A B C D E F H G I E H G

A B C D E F H G I E A B C D E F H G I

A B C D E F H G I E A B C D E F H G I

10: Representing Context Needed: a grammar to show usage "What is sensible to say" Consider modeling "events"

Controlled Medical Vocabulary Definitional Knowledge (how concepts define each other) Body Site Joint is -a Finding Joint Swelling Pathologic Function Swelling is -a Right Knee is -a has- abnormality has- site

Controlled Medical Vocabulary Definitional Knowledge (how concepts define each other) Assertional Knowledge (how concepts combine) Body Site Finding modifies Joint is -a Finding Joint Swelling Pathologic Function Swelling is -a Right Knee is -a has- abnormality has- site

Controlled Medical Vocabulary Definitional Knowledge (how concepts define each other) Assertional Knowledge (how concepts combine) Contextual Knowledge (how concepts are used) Body Site Finding Physical Exam Progress Note Hospital Admission part-of modifies Joint is -a Finding Joint Swelling Pathologic Function Swelling is -a Right Knee is -a has- abnormality has- site

Electronic Medical Record Controlled Medical Vocabulary Definitional Knowledge (how concepts define each other) Assertional Knowledge (how concepts combine) Contextual Knowledge (how concepts are used) Body Site Finding Physical Exam Progress Note Hospital Admission part-of modifies Hospital Admission Progress Note Physical Exam [Joint Swelling [Right Knee]] Joint is -a Finding Joint Swelling Pathologic Function Swelling is -a Right Knee is -a has- abnormality has- site

11: Graceful Evolution Will always need to fix mistakes Medical knowledge will grow Bad reasons Good reasons

11: Graceful Evolution Bad reasons: - Redundancy - Major name changes - Code reuse - Changed codes

11: Graceful Evolution Good reasons: - Simple addition - Refinement - Precoordination - Disambiguation - Obsolescence - Discovered redundancy - Minor name changes

12: Recognize Redundancy Synonyms are good Redundant concepts are bad Redundant expressions are inevitable Example: - Year 1: "Pneumonia", "Left Lower Lobe" - Year 2: "Left Lower Lobe Pneumonia"

12: Recognize Redundancy Pneumonia Finding Left Lower Lobe

12: Recognize Redundancy Left Lower Lobe Pneumonia Pneumonia Finding Left Lower Lobe

12: Recognize Redundancy Left Lower Lobe Pneumonia is-a: Pneumonia Pneumonia Finding Left Lower Lobe

12: Recognize Redundancy Left Lower Lobe Pneumonia is-a: Pneumonia has-site: Left Lower Lobe Pneumonia Finding Left Lower Lobe

12: Recognize Redundancy Left Lower Lobe Pneumonia is-a: Pneumonia has-site: Left Lower Lobe participates-in: Finding Pneumonia Finding Left Lower Lobe

12: Recognize Redundancy Left Lower Lobe Pneumonia is-a: Pneumonia has-site: Left Lower Lobe participates-in: Finding Pneumonia Finding Left Lower Lobe

What's Here Today? 1: Content 4: Nonsemantic Concept Identifiers 8: Multiple Granularities 10: Multiple Consistent Views

What May Be Here Soon? 2: Concept Orientation 3: Concept Permanence 5: Polyhierarchy 6: Formal Definitions 7: Reject "Not Elsewhere Classified"

What's Left? 10: Representing Context 11: Graceful Evolution 12: Recognize Redundancy

Keep Your Eye on the Goal Recording primary clinical information Multipurpose (re-use) Sharing data Maintenance