Dishonest Casino Let’s take a look at a casino that uses a fair die most of the time, but occasionally changes it to a loaded die. This model is hidden.

Slides:

Advertisements

Similar presentations

Hidden Markov Models (HMM) Rabiner’s Paper

Advertisements

Large Vocabulary Unconstrained Handwriting Recognition J Subrahmonia Pen Technologies IBM T J Watson Research Center.

Marjolijn Elsinga & Elze de Groot1 Markov Chains and Hidden Markov Models Marjolijn Elsinga & Elze de Groot.

Learning HMM parameters

Hidden Markov Model.

The Occasionally Dishonest Casino Narrated by: Shoko Asei Alexander Eng.

Rolling Dice Data Analysis - Hidden Markov Model Danielle Tan Haolin Zhu.

. Computational Genomics Lecture 10 Hidden Markov Models (HMMs) © Ydo Wexler & Dan Geiger (Technion) and by Nir Friedman (HU) Modified by Benny Chor (TAU)

Bioinformatics Hidden Markov Models. Markov Random Processes n A random sequence has the Markov property if its distribution is determined solely by its.

Hidden Markov Models.

 CpG is a pair of nucleotides C and G, appearing successively, in this order, along one DNA strand.  CpG islands are particular short subsequences in.

Hidden Markov Models Modified from:

Hidden Markov Models Ellen Walker Bioinformatics Hiram College, 2008.

Hidden Markov Model Most pages of the slides are from lecture notes from Prof. Serafim Batzoglou’s course in Stanford: CS 262: Computational Genomics (Winter.

Natural Language Processing Spring 2007 V. “Juggy” Jagannathan.

Hidden Markov Models 1 2 K … 1 2 K … 1 2 K … … … … 1 2 K … x1x1 x2x2 x3x3 xKxK 2 1 K 2.

Apaydin slides with a several modifications and additions by Christoph Eick.

Hidden Markov Models Usman Roshan BNFO 601.

… Hidden Markov Models Markov assumption: Transition model:

Hidden Markov Model 11/28/07. Bayes Rule The posterior distribution Select k with the largest posterior distribution. Minimizes the average misclassification.

Hidden Markov Models I Biology 162 Computational Genetics Todd Vision 14 Sep 2004.

Part 4 b Forward-Backward Algorithm & Viterbi Algorithm CSE717, SPRING 2008 CUBS, Univ at Buffalo.

Hidden Markov Models 1 2 K … 1 2 K … 1 2 K … … … … 1 2 K … x1x1 x2x2 x3x3 xKxK 2 1 K 2.

Hidden Markov Models 1 2 K … 1 2 K … 1 2 K … … … … 1 2 K … x1x1 x2x2 x3x3 xKxK 2 1 K 2.

. Class 5: HMMs and Profile HMMs. Review of HMM u Hidden Markov Models l Probabilistic models of sequences u Consist of two parts: l Hidden states These.

Hidden Markov Models K 1 … 2. Outline Hidden Markov Models – Formalism The Three Basic Problems of HMMs Solutions Applications of HMMs for Automatic Speech.

Lecture 9 Hidden Markov Models BioE 480 Sept 21, 2004.

Hidden Markov Models Usman Roshan BNFO 601. Hidden Markov Models Alphabet of symbols: Set of states that emit symbols from the alphabet: Set of probabilities.

Bioinformatics Hidden Markov Models. Markov Random Processes n A random sequence has the Markov property if its distribution is determined solely by its.

Hidden Markov Models Usman Roshan BNFO 601. Hidden Markov Models Alphabet of symbols: Set of states that emit symbols from the alphabet: Set of probabilities.

Viterbi Algorithm. Computing Probabilities viterbi [ s, t ] = max(s’) ( viterbi [ s’, t-1] * transition probability P(s | s’) * emission probability P.

Hidden Markov Models.

Doug Downey, adapted from Bryan Pardo,Northwestern University

Hidden Markov Models David Meir Blei November 1, 1999.

Hidden Markov Models 戴玉書

Hidden Markov Models. Hidden Markov Model In some Markov processes, we may not be able to observe the states directly.

Hidden Markov models Sushmita Roy BMI/CS 576 Oct 16 th, 2014.

Learning HMM parameters Sushmita Roy BMI/CS 576 Oct 21 st, 2014.

CS262 Lecture 5, Win07, Batzoglou Hidden Markov Models 1 2 K … 1 2 K … 1 2 K … … … … 1 2 K … x1x1 x2x2 x3x3 xKxK 2 1 K 2.

. Class 5: Hidden Markov Models. Sequence Models u So far we examined several probabilistic model sequence models u These model, however, assumed that.

Class 5 Hidden Markov models. Markov chains Read Durbin, chapters 1 and 3 Time is divided into discrete intervals, t i At time t, system is in one of.

1 Markov Chains. 2 Hidden Markov Models 3 Review Markov Chain can solve the CpG island finding problem Positive model, negative model Length? Solution:

Combined Lecture CS621: Artificial Intelligence (lecture 25) CS626/449: Speech-NLP-Web/Topics-in- AI (lecture 26) Pushpak Bhattacharyya Computer Science.

Fundamentals of Hidden Markov Model Mehmet Yunus Dönmez.

Hidden Markov Models Yves Moreau Katholieke Universiteit Leuven.

Hidden Markov Models Usman Roshan CS 675 Machine Learning.

PGM 2003/04 Tirgul 2 Hidden Markov Models. Introduction Hidden Markov Models (HMM) are one of the most common form of probabilistic graphical models,

Hidden Markov Models 1 2 K … 1 2 K … 1 2 K … … … … 1 2 K … x1x1 x2x2 x3x3 xKxK 2 1 K 2.

Algorithms in Computational Biology11Department of Mathematics & Computer Science Algorithms in Computational Biology Markov Chains and Hidden Markov Model.

1 Hidden Markov Model Observation : O1,O2,... States in time : q1, q2,... All states : s1, s2,... Si Sj.

1 Hidden Markov Model Observation : O1,O2,... States in time : q1, q2,... All states : s1, s2,..., sN Si Sj.

Hidden Markov Model Parameter Estimation BMI/CS 576 Colin Dewey Fall 2015.

Bayan Turki Bagasi.  Introduction  Generating a Test Sequence  Estimating the State Sequence  Estimating Transition and Emission Matrices  Estimating.

Visual Recognition Tutorial1 Markov models Hidden Markov models Forward/Backward algorithm Viterbi algorithm Baum-Welch estimation algorithm Hidden.

Hidden Markov Models BMI/CS 576

Learning, Uncertainty, and Information: Learning Parameters

HMM (Hidden Markov Models)

EEL 6586: AUTOMATIC SPEECH PROCESSING Hidden Markov Model Lecture

CHAPTER 15: Hidden Markov Models

Hidden Markov Models - Training

Hidden Markov Models Part 2: Algorithms

Three classic HMM problems

Hidden Markov Model LR Rabiner

CISC 667 Intro to Bioinformatics (Fall 2005) Hidden Markov Models (I)

Algorithms of POS Tagging

Introduction to HMM (cont)

Hidden Markov Models By Manish Shrivastava.

CISC 667 Intro to Bioinformatics (Fall 2005) Hidden Markov Models (I)

Presentation transcript:

Dishonest Casino Let’s take a look at a casino that uses a fair die most of the time, but occasionally changes it to a loaded die. This model is hidden because we see the sequence of rolls, but we don’t know which die was used for each roll.

Assumptions Suppose that we know the expected behavior of the fair and the loaded die, and the probability of switching between them. The emission and transition probabilities for both dies are depictured below

Finding the most probable path There are two states in this model: Fair and Loaded Finding the path of states for a specific rolls sequence is determining what was the state (or which die was used) for each particular roll in this sequence. One way to do it is to try all the possible state combinations and to compute probability for each of them in the following way:

The Viterbi Algorithm There are a few algorithms for finding the most probable states in HMM: Viterbi, forward, Baum- Welch The most common is Viterbi, for its speed / accuracy ratio. The result that interests us is In the Viterbi algorithm the most probable path is found recursively

The result produced by Viterbi algorithm

How it works Suppose that we know the probability Vk(i) of the most probable path ending in state k with observation X i for each k. Then the probabilities for V l (i+1) can be computed in the following way: The initial condition is V 0 (0) = 1. By keeping pointers backwards, the actual state sequence can be found by backtracking

The Viterbi algorithm Now let’s see how it is implemented in Mathematica

Bibliography “Biological Sequence Analysis”, R.Durbin