Measurable Interoperability for Archival Data Lewis J. Frey, PhD

Slides:



Advertisements
Similar presentations
Introduction The cancerGrid metadata registry (cgMDR) has proved effective as a lightweight, desktop solution, interoperable with caDSR, targeted at the.
Advertisements

27 June 2005caBIG an initiative of the National Cancer Institute, NIH, DHHS caBIG the cancer Biomedical Informatics Grid Arumani Manisundaram caBIG - Project.
Meta Data Larry, Stirling md on data access – data types, domain meta-data discovery Scott, Ohio State – caBIG md driven architecture semantic md Alexander.
CVRG Presenter Disclosure Information Joel Saltz MD, PhD Director Comprehensive Informatics Center Emory University Translational Research Informatics.
Consistent and standardized common model to support large-scale vocabulary use and adoption Robust, scalable, and common API to reduce variation in clinical.
Domain Engineering Silvio Romero de Lemos Meira
IPY and Semantics Siri Jodha S. Khalsa Paul Cooper Peter Pulsifer Paul Overduin Eugeny Vyazilov Heather lane.
AHSN Digital Health Event, iHouse, Coventry Professor T.N. Arvanitis - 13/12/2013 Enabling clinical research in West Midlands: ePCRN, TRANSFoRm and CuRE.
Looking ahead: caGrid community requirements in the context of caGrid 2.0 Lawrence Brem 7 February 2011.
MOLEDINA-1 CSE 5810 CSE5810: Intro to Biomedical Informatics The Role of AI in Clinical Decision Support Saahil Moledina University of Connecticut
© Copyright 2008, Mayo Clinic College of Medicine Mayo Clinic Open Health Tools Application for Membership OHT Board Meeting, Birmingham, UK July 1, 2008.
Overview of Nursing Informatics
Overview of Biomedical Informatics Rakesh Nagarajan.
CaGrid Service Metadata Scott Oster - Ohio State
Introduction to UML Visual modeling Models and its importance
UML CASE Tool. ABSTRACT Domain analysis enables identifying families of applications and capturing their terminology in order to assist and guide system.
Development Principles PHIN advances the use of standard vocabularies by working with Standards Development Organizations to ensure that public health.
V. Chandrasekar (CSU), Mike Daniels (NCAR), Sara Graves (UAH), Branko Kerkez (Michigan), Frank Vernon (USCD) Integrating Real-time Data into the EarthCube.
University of Wyoming Center for Rural Health Research and Education Rex Gantenbein, PhD – Director Barb Robinson, RN PHD – Research Scientist.
OpenMDR: Generating Semantically Annotated Grid Services Rakesh Dhaval Shannon Hastings.
Department of Biomedical Informatics Development of Ontology-anchored Grid-based Data Services to Facilitate Integrative Clinical and Translational Science.
The Cancer Biomedical Informatics Grid: An Information Infrastructure for Healthcare and Life Sciences Amy Walker CEO and Healthcare IT Strategist Center.
Cancer Bioinformatics Grid (caBIG) CANS 2006 Chicago, Illinois Shannon Hastings Department of Biomedical Informatics Ohio State University.
Imaging Workspace An Overview and Roadmap Eliot L. Siegel, MD Imaging Workspace Lead SME January 23, 2008.
Sage Bionetworks Mission Sage Bionetworks is a non-profit organization with a vision to create a “commons” where integrative bionetworks are evolved by.
Evaluating the Effectiveness of the CTRC: Designing Quantitative and Qualitative Measures to Assess in Real Time the Value of the Center Mike Conlon, University.
Department of Biomedical Informatics Service Oriented Bioscience Cluster at OSC Umit V. Catalyurek Associate Professor Dept. of Biomedical Informatics.
CaBIG ® Imaging and IHE ® Potential Synergies Fred Prior and Lawrence Tarbox March, 2009.
CaBIG Semantic Infrastructure 2.0: Supporting TBPT Needs Dave Hau, M.D., M.S. Acting Director, Semantic Infrastructure NCI Center for Biomedical Informatics.
Cancer Clinical Trial Suite (CCTS): An Introduction for Users A Tool Demonstration from caBIG™ Bill Dyer (NCI/Pyramed Research) June 2008.
Using the Open Metadata Registry (openMDR) to create Data Sharing Interfaces October 14 th, 2010 David Ervin & Rakesh Dhaval, Center for IT Innovations.
Making Connections: SHARE and the Open Science Framework Jeffrey Open Repositories 2015.
Integrated Biomedical Information for Better Health Workprogramme Call 4 IST Conference- Networking Session.
The National Biomedical Imaging Archive (NBIA) In Action: An Introduction for Users A Tool Demonstration from caBIG® Presented by: Eliot Siegel, MD Maryland.
Interoperability Framework Overview Health Information Technology (HIT) Standards Committee June 24, 2010 Presented by: Douglas Fridsma, MD, PhD Acting.
H Using the Open Metadata Registry (OpenMDR) to generate semantically annotated grid services Rakesh Dhaval, MS, Calixto Melean,
Middleware Support for Virtual Organizations Internet 2 Fall 2006 Member Meeting Chicago, Illinois Stephen Langella Department of.
Value Set Resolution: Build generalizable data normalization pipeline using LexEVS infrastructure resources Explore UIMA framework for implementing semantic.
CaBIG ® VCDE Workspace Tactics thru June 14, 2010: How working groups fit together, and other activities Brian Davis April 1, 2010 VCDE WS Teleconference.
CaGrid Overview and Core Services caGrid Knowledge Center February 2011.
HL7 Electronic Health Record System (EHR-S) Public Health Functional Profile (PHFP) Project PHDSC Annual Business Meeting November 8, 2012 Hetty Khan Health.
This material was developed by Duke University, funded by the Department of Health and Human Services, Office of the National Coordinator for Health Information.
A LexWiki-based Representation and Harmonization Framework for caDSR Common Data Elements Guoqian Jiang, Ph.D. Robert Freimuth, Ph.D. Harold Solbrig Mayo.
Standard 2. Diagnosis The registered nurse analyzes the assessment data to determine the diagnosis or the issues.
Robert H. Wiltrout Director, CCR Director’s Address.
© 2015 Akana., Inc All Rights Reserved. From Data to Knowledge Semantics & Implementations.
caELMIR an Electronic Laboratory Management Information and Retrieval system for pre- clinical experimental data.
Ontology-Based Interoperability Service for HL7 Interfaces Implementation Carolina González, Bernd Blobel and Diego López eHealth Competence Center, Regensurg.
Mt. Hood. IOM Report: 10 Years After & More Coming Mitch Greenlick, Ph.D. Oregon State Representative April 21, 2010.
Identifiers, Resources, EPRs,and Missing Links OSG - Middleware Security Group Meeting Mon-Tue, June 5-6, 2006, SLAC, Stanford, CA Frank Siebenlist (Argonne.
High Risk 1. Ensure productive use of GRID computing through participation of biologists to shape the development of the GRID. 2. Develop user-friendly.
Semantic Media Wiki Open Terminology Development - Initial Steps - Frank Hartel, Ph.D. Associate Director, Enterprise Vocabulary Services National Cancer.
Challenges and issues with information sharing: The four pillars of semantic interoperability Douglas B. Fridsma, MD, PhD, FACP University of Pittsburgh.
Imaging Workspace An Overview and Roadmap Eliot L. Siegel, MD Imaging Workspace Lead SME January 23, 2008.
National Cancer Institute caDSR Briefing for Small Scale Harmonication Project Denise Warzel Associate Director, Core Infrastructure caCORE Product Line.
1 caBIG®-aligned Enterprise Metadata Infrastructure to Support Commercial Clinical Trials Management Software: A Pilot Implementation September 11, 2009.
Enterprise Security Program Overview Presenter: Braulio J. Cabral NCI-CBIIT/caBIG Enterprise Security Program Coordinator.
Informatics for Scientific Data Bio-informatics and Medical Informatics Week 9 Lecture notes INF 380E: Perspectives on Information.
Semantic Interoperability: caCORE and the Cancer Data Standards Repository (caDSR)  Jennifer Brush.
C3PR: An Introduction for Users A Tool Demonstration from caBIG™ Vijaya Chadaram Duke Cancer Center April 29, 2008.
Cancer Bioinformatics Grid (caBIG) CANS 2006 Chicago, Illinois
Semantic Web - caBIG Abstract: 21st century biomedical research is driven by massive amounts of data: automated technologies generate hundreds of.
NAACCR and caBIG® Interoperability
Achieving Semantic Interoperability of Cancer Registries
Networking and Health Information Exchange
Clinical Observation Interoperability March 18, 2008
Carolina Mendoza-Puccini, MD
Grid Application Model and Design and Implementation of Grid Services
Bird of Feather Session
Presentation transcript:

Measurable Interoperability for Archival Data Lewis J. Frey, PhD

‹#› Objective Discuss the importance of using measures to assess interoperability

‹#› National Cancer Institute (NCI)’s cancer Biomedical Informatics Grid (caBIG ® ) “Connect scientists and practitioners through a shareable and interoperable infrastructure” “Develop standard rules and a common language to more easily share information” “Build or adapt tools for collecting, analyzing, integrating, and disseminating information associated with cancer research and care. “ “The mission of caBIG™ is to develop a truly collaborative information network that accelerates the discovery of new approaches for the detection, diagnosis, treatment, and prevention of cancer, ultimately improving patient outcomes.” 1. About caBIG ™ accessed July 25, 2008 caBIG is an initiative to connect scientists and practitioners with standards based tools and services to ultimately improve patient outcomes.

‹#› Information tsunami and the tower of Babel The Information Tsunami –The ever increasing and overwhelming volume of data –Multitude of data sources (clinical, genetic, epidemiologic, etc…) A Research Tower of Babel –Each research community speaks its own scientific “dialect” resulting in a confusion of tongues –Integration is critical to achieve understanding & synthesizing findings for discovery Material adapted from:

‹#› caBIG Interoperability ability of a system to access and use the parts or equipment of another system Semantic interoperability Syntactic interoperability

‹#› HL7 Interoperability

‹#› Measurable Interoperability Quantification of shared meaning and means of information communication Measures –reuse of data representation –error free operations on data within and between institutions/systems –reproducibility of results stored in data archives

‹#› Unified Modeling Language 7/14/2015 8

‹#› ISO Corresponding metadata representation Common Data Element –Value Domain –Data Element Concepts  Object Class  Property Enterprise Vocabulary Service (EVS) 7/14/2015 9

‹#› UML Mapping to CDE example 7/14/

‹#› Limitations In order to maximize interoperability it is important to reuse metadata objects A difficulty of the infrastructure has been the scalability of binding terminology to UML objects through the use of human curators. The ISO object-oriented data representation has also put constraints on the representation of objects that has resulted in the inability to reuse objects among applications. 7/14/

‹#› Conclusion caBIG infrastructure provides a working system on which to measure interoperability in terms of the meaning and means of information communication Infrastructures can be compared using interoperability measures to choose systems that meet stakeholder needs Data archives can move to infrastructures that provide the greatest benefit for sharing their resources