Mark Chaplain, The SIMBIOS Centre, Department of Mathematics, University of Dundee, Dundee, DD1 4HN. Mathematical modelling of solid tumour growth: Applications.

Slides:



Advertisements
Similar presentations
Reaction-Diffusion Modelling of Pattern Formation. Charlotte E. Jupp*, Ruth E. Baker, Philip K. Maini. Centre for Mathematical Biology, University of Oxford.
Advertisements

Jochen Triesch, UC San Diego, 1 Pattern Formation Goal: See how globally ordered spatial structures can arise from local.
Cosmina S. Hogea University of Pennsylvania, SBIA Gregory J. Herring University of Massachusetts – Amherst, Dept. of Mathematics
How can dynamic kinetochore movements result in stable kinetochore cluster positioning in metaphase?
Metastasis. Mechanisms of Invasion and Metastasis.
Modelling Cell Signalling and Pattern Formation Nick Monk Department of Computer Science Collaboration: Erik Plahte & Siren Veflingstad Agricultural University.
Mathematical Modelling of the Spatio-temporal Response of Cytotoxic T-Lymphocytes to a Solid Tumour Mark A.J. Chaplain Anastasios Matzavinos Vladimir A.
Instabilidades de Turing e Competição Aparente em Ambientes Fragmentados Marcus A.M. de Aguiar Lucas Fernandes IFGW - Unicamp.
How Leopards get Their Spots Will Brennan How Zebras Get Their Stripes.
Turing Patterns in Animal Coats Junping Shi. Alan Turing ( )  One of greatest scientists in 20 th century  Designer of Turing machine (a theoretical.
The role of acidity in tumours invasion Antonio Fasano Dipartimento di Matematica U. Dini Firenze IASI, Roma
Space in Unified Models of Economy and Ecology or... ? Space: The final frontier A. Xepapadeas* University of Crete, Department of Economics * Research.
BZ and the Turing Instability Tamas Bansagi BZ Boot Brandeis.
A Theory of Biological Pattern Formation Presented by Xia Fan.
Cell Cycle Control at the First Restriction Point and its Effect on Tissue Growth Joint work with Avner Friedman and Bei Hu (MBI, The Ohio State University.
Two continuum models for the spreading of myxobacteria swarms Angela Gallegos1, Barbara Mazzag2, Alex Mogilner1¤ 1 Department of Mathematics, University.
Modelling acid-mediated tumour invasion Antonio Fasano Dipartimento di Matematica U. Dini, Firenze Levico, sept
Project Macrophage Math Biology Summer School 2008 Jennifer Morrison & Caroline Séguin.
Mark Chaplain, The SIMBIOS Centre, Division of Mathematics, University of Dundee, Dundee, DD1 4HN SCOTLAND Mathematical modelling of cell cytoskeleton.
Marcus Tindall Centre for Mathematical Biology Mathematical Institute St Giles’ Oxford. PESB, Manchester, 2007.
Jochen Triesch, UC San Diego, 1 Pattern Formation in Neural Fields Goal: Understand how non-linear recurrent dynamics can.
Department of Chemical Engineering University of California, Los Angeles 2003 AIChE Annual Meeting San Francisco, CA November 17, 2003 Nael H. El-Farra.
Project Macrophage: Macrophages on the Move Heather More, Rachel Psutka, Vishaal Rajani.
Modeling Tumor Growth Katie Hogan 7 December 2006.
SCB : 1 Department of Computer Science Simulation and Complexity SCB : Simulating Complex Biosystems Susan Stepney Department of Computer Science Leo Caves.
Modelling Flow Distributed Oscillations In The CDIMA Reaction Jonathan R Bamforth, Serafim Kalliadasis, John H Merkin, Stephen K Scott School of Chemistry,
Pattern Formation Patrick Lucey.
The Trees for the Forest A Discrete Cell Model of Tumor Growth, Development, and Evolution Ph.D. student in Mathematics/Computational Bioscience Dept.
Pattern Formation and Diffusion Driven Instability.
1 MODELING DT VAPORIZATION AND MELTING IN A DIRECT DRIVE TARGET B. R. Christensen, A. R. Raffray, and M. S. Tillack Mechanical and Aerospace Engineering.
Ann Wells University of Tennessee-Knoxville Kara Kruse, M.S.E.
Chapter 8 Applications In physics In biology In chemistry In engineering In political sciences In social sciences In business.
CompuCell Software Current capabilities and Research Plan Rajiv Chaturvedi Jesús A. Izaguirre With Patrick M. Virtue.
Hiroki Sayama 2nd Annual French Complex Systems Summer School Continuous Space, Lattices and Swarms: Pattern Formation in Complex.
REACTOR DYNAMICS Fronts Spontaneous Oscillations and Patterns :
Exercise: SIR MODEL (Infected individuals do not move, they stay at home) What is the effect of diffusion? How is the behavior affected by the diffusion.
Supergranulation Waves in the Subsurface Shear Layer Cristina Green Alexander Kosovichev Stanford University.
Heat Equation and its applications in imaging processing and mathematical biology Yongzhi Xu Department of Mathematics University of Louisville Louisville,
Hybrid Model For Prostate Tumorigenesis Maria Audi Byrne, University of South Alabama MMA Florida Chapter Meeting 5:15 – 5:40 PM November 20, 2009.
Cell-Cell Communication  Modes of Cellular Adhesion  Movement of Cells/Tissues  We’re here, now what? Cell Signaling and differentiation  Contacting.
Introduction to Self-Organization
Diffusional Limitation in Immobilized Enzyme System Immobilized enzyme system normally includes - insoluble immobilized enzyme - soluble substrate, or.
Mathematical Modelling of Cancer Invasion of Tissue: The Role of the Urokinase Plasminogen Activation System Mark Chaplain and Georgios Lolas Division.
Sketch Outline Ising, bio-LGCA and bio-Potts models Potts model general description computational description Examples of ‘energies’ (specifying interactions)
Laboratoire Environnement, Géomécanique & Ouvrages Comparison of Theory and Experiment for Solute Transport in Bimodal Heterogeneous Porous Medium Fabrice.
Agent-based modelling of epithelial cells An example of rule formulation and extension Dr Dawn Walker, University of Sheffield, UK.
Department of Aerospace Engineering and Mechanics, Hydrodynamic surface interactions of Escherichia coli at high concentration Harsh Agarwal, Jian Sheng.
Recycle packed column reactor: - allow the reactor to operate at high fluid velocities. - a substrate that cannot be completely processed on a single.
1 Computational Modeling in Quantitative Cancer Imaging Biomedical Science and Engineering Conference 18 March 2009 Tom Yankeelov, Nkiruka Atuegwu, John.
Multiscale Modeling of Avascular Tumor Growth Jelena Pjesivac-Grbovic Theoretical Division 7, LANL Ramapo college of New Jersey University of Tennessee,
Lecture – 4 The Kinetics of Enzyme-Catalyzed Reactions Dr. Saleha Shamsudin.
Discretization Methods Chapter 2. Training Manual May 15, 2001 Inventory # Discretization Methods Topics Equations and The Goal Brief overview.
Pattern formation in nonlinear reaction-diffusion systems.
CHAPTER 1 ENZYME KINETICS AND APPLICATIONS Kinetics of Enzyme Catalyzed Reactions Applied Enzyme Catalysis Lets recall….
The Rayleigh-Taylor Instability By: Paul Canepa and Mike Cromer Team Leftovers.
The Landscape Ecology of Invasive Spread Question: How is spatial pattern expected to affect invasive spread? Premise: Habitat loss and fragmentation leads.
Arthur Straube PATTERNS IN CHAOTICALLY MIXING FLUID FLOWS Department of Physics, University of Potsdam, Germany COLLABORATION: A. Pikovsky, M. Abel URL:
Pattern Formation in Tissues Walter de Back, Fabian Rost, Lutz Brusch ZIH,TU Dresden Kondo and Miura 2010, Science 329, 1616.
Reaction-Diffusion by A.Sacan & S.Girgin1 Pattern Formation by Reaction-Diffusion Sertan Girgin Ahmet Saçan.
Integrin-EGFR Cross-Activation Elizabeth Brooks Department of Chemical Engineering University of Massachusetts, Amherst Peyton Lab Group Meeting December.
Lateral inhibition through the
What is cell signaling? Mechanisms that one cell uses to communicate and influence the behavior of another cell. In a broader sense, the signaling could.
A Stochastic Model of Cell Differentiation
First 10 minutes to fill out online course evaluations
Pattern Formation by Reaction-Diffusion
Figure 1 Morphological and physiological changes
Reaction & Diffusion system
Volume 95, Issue 1, Pages (July 2008)
Avigdor Eldar, Dalia Rosin, Ben-Zion Shilo, Naama Barkai 
Metastasis.
Presentation transcript:

Mark Chaplain, The SIMBIOS Centre, Department of Mathematics, University of Dundee, Dundee, DD1 4HN. Mathematical modelling of solid tumour growth: Applications of Turing pre-pattern theory

Talk Overview Biological (pathological) background Avascular tumour growth Invasive tumour growth Reaction-diffusion pre-pattern models Growing domains Conclusions

The Individual Cancer Cell “A Nonlinear Dynamical System”

~ 10 6 cells maximum diameter ~ 2mm Necrotic core Quiescent region Thin proliferating rim The Multicellular Spheroid: Avascular Growth

Malignant tumours: CANCER Generic name for a malignant epithelial (solid) tumour is a CARCINOMA (Greek: Karkinos, a crab). Irregular, jagged shape often assumed due to local spread of carcinoma. Basement membraneCancer cells break through basement membrane

Turing pre-pattern theory: Reaction-diffusion models reaction diffusion n ^

Turing pre-pattern theory: Reaction-diffusion models Two “morphogens” u,v: Growth promoting factor (activator) Growth inhibiting factor (inhibitor) Consider the spatially homogeneous steady state (u 0, v 0 ) i.e. We require this steady state to be (linearly) stable (certain conditions on the Jacobian matrix)

Turing pre-pattern theory: Reaction-diffusion models We consider small perturbations about this steady state: it can be shown that…. spatial eigenfunctions

Turing pre-pattern theory: Reaction-diffusion models...we can destabilise the system and evolve to a new spatially heterogeneous stable steady state (diffusion-driven instability) provided that: where DISPERSION RELATION

Dispersion curve Re λ k2k2

Mode selection: dispersion curve Re λ k2k2

Turing pre-pattern theory…. robustness of patterns a potential problem (e.g. animal coat marking) (lack of) identification of morphogens ??? 1) Crampin, Maini et al. - growing domains; Madzvamuse, Sekimura, Maini - butterfly wing patterns; 2) limited number of “morphogens” found; de Kepper et al;

Turing pre-pattern theory: RD equations on the surface of a sphere Growth promoting factor (activator) u Growth inhibiting factor (inhibitor) v Produced, react, diffuse on surface of a tumour spheroid

Numerical analysis technique Spectral method of lines: Apply Galerkin method to system of reaction-diffusion equations (PDEs) and then end up with a system of ODEs to solve for (unknown) coefficients Spherical harmonics: eigenfunctions of Laplace operator on surface of sphere mode 1 patternmode 2 pattern

Galerkin Method

Numerical Quadrature

Collaborators M.A.J. Chaplain, M. Ganesh, I.G. Graham “Spatio-temporal pattern formation on spherical surfaces: numerical simulation and application to solid tumour growth.” J. Math. Biol. (2001) 42, Spectral method of lines, numerical quadrature, FFT reduction from O(N 4 ) to O(N 3 logN) operations

Numerical experiments on Schnackenberg system

Mode selection: n=2

Chemical pre-patterns on the sphere mode n=2

Mode selection: n=4

Chemical pre-patterns on the sphere mode n=4 mitotic “hot spot”

Mode selection: n=6

Chemical pre-patterns on the sphere mode n=6 mitotic “hot spots”

Solid Tumours Avascular solid tumours are small spherical masses of cancer cells Observed cellular heterogeneity (mitotic activity) on the surface and in interior (multiple necrotic cores) Cancer cells secrete both growth inhibitory chemicals and growth activating chemicals in an autocrine manner:- TGF-β (-ve) EGF, TGF-α, bFGF, PDGF, IGF, IL-1α, G-CSF (+ve) TNF-α (+/-) Experimentally observed interaction (+ve, -ve feedback) between several of the growth factors in many different types of cancer

Biological model hypotheses radially symmetric solid tumour, radius r = R thin layer of live, proliferating cells surrounding a necrotic core live cells produce and secrete growth factors (inhibitory/activating) which react and diffuse on surface of solid spherical tumour growth factors set up a spatially heterogeneous pre-pattern (chemical diffusion time-scale much faster than tumour growth time scale) local “hot spots” of growth activating and growth inhibiting chemicals live cells on tumour surface respond proliferatively (+/–) to distribution of growth factors

The Individual Cancer Cell

Multiple mode selection: No isolated mode

Chemical pre-pattern on sphere no specific selected mode

Invasion patterns arising from chemical pre-pattern

Growing domain: Moving boundary formulation spherical solid tumour r = R(t) radially symmetric growth at boundary R(t) = 1 + αt

Mode selection in a growing domain t = 21 t = 15t = 9

Chemical pre-pattern on a growing sphere

1D growing domain: Boundary growth Growth occurs at the end or edge or boundary of domain only Growth occurs at all points in domain uniform domain growth

G. Lolas Spatio-temporal pattern formation and reaction-diffusion equations. (1999) MSc Thesis, Department of Mathematics, University of Dundee.

1D growing domain: Boundary growth

Dispersion curve Re λ k2k2 2090

Spatial wavenumber spacing nk 2 = n(n+1)k 2 = n 2 π 2 (sphere) (1D)

2D growing domain: Boundary growth

Cell migratory response to soluble molecules: CHEMOTAXIS

No ECM with ECM ECM + tenascinEC & Cell migratory response to local tissue environment cues HAPTOTAXIS

The Individual Cancer Cell “A Nonlinear Dynamical System”

Tumour cells produce and secrete Matrix-Degrading-Enzymes MDEs degrade the ECM creating gradients in the matrix Tumour cells migrate via haptotaxis (migration up gradients of bound - i.e. insoluble - molecules) Tissue responds by secreting MDE-inhibitors Tumour Cell Invasion of Tissue

Identification of a number of genuine autocrine growth factors practical application of Turing pre-pattern theory (50 years on….!) heterogeneous cell proliferation pattern linked to underlying growth-factor pre-pattern irregular invasion of tissue “robustness” is not a problem; each patient has a “different” cancer; growing domain formulation clinical implication for regulation of local tissue invasion via growth-factor concentration level manipulation Conclusions

Summary localised avascular solid tumour aggressive invading solid tumour Turing pre-pattern theory