Fig. S1 A622 1 MVVSEKSKILIIGGTGYIGKYLVETSAKSGHPTFALIRESTLKNPEKSKLIDTFKSYGVT 60 A622L 1..................................V.......V................. 60 A622.

Slides:



Advertisements
Similar presentations
Additional Powerful Molecular Techniques Synthesis of cDNA (complimentary DNA) Polymerase Chain Reaction (PCR) Microarray analysis Link to Gene Therapy.
Advertisements

DNA Technology. Biotechnology The use or alteration of cells or biological molecules for specific applications Transgenics Transgenic “changed genes”
Polymerase Chain Reaction PCR. invented by Karry B. Mullis (1983, Nobel Prize 1993) patent sold by Cetus corp. to La Roche for $300 million depends on.
Figure S1. Genomic PCR of in vitro potato plants transformed with StPTB1 prom (top) and StPTB6 prom (bottom) constructs using nptII-specific primers. Thirty.
Supplemental data 1. Correspondence between Ensembl genes and proteins accession numbers.
PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1 PfDGAT1-2 AtDGAT1 RcDGAT1 PfDGAT1-1.
Basic Local Alignment Search Tool BLAST Why Use BLAST?
JIGSAW: a better way to combine predictions J.E. Allen, W.H. Majoros, M. Pertea, and S.L. Salzberg. JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the.
Figure S1. RACE mapped transcription starts and polyA signals of Ogre CL5 and Ogre CL5del and putative splice site of Ogre CL5 and Ogre CL5del in Silene.
Figure 1. RT–PCR identification of an abnormal transcript of the PTPN6 gene in normal and leukemic bone marrow cells and cell line. (a) Diagrammatic representation.
C acaatataATGGAGCGTGAGACTTCGTCATCTTCAACTCCTCCGGAGGATCTTGTTACATCGATGATCGGAAAGTTCGTCGCTGTCATGTCTA b acaatataATGGAGCGTGAGACTTCGTCATCTTCAACTCCTCCGGAGGATCTTGTTACATCGATGATCGGAAAGTTCGTCGCTGTCTTGTCTA.
Rupp et al. Supplementary Figure 1: Structure of the human troponin T gene Exon 6 Genomic DNA cDNA from mRNA mutation Exon 9 Exon bp Parts of genomic.
Schematic drawing of the human X chromosome and physical map the Xp interval carrying the ND gene. A 640-kb yeast artificial chromosome (YAC) clone was.
Supplementary Materials
Fig. 1. (A) The nucleotide and deduced amino acid sequences of the vacuolar serine protease protein of F. proliferatum (Fus p , GenBank accession.
Recurrent inversion breaking intron 1 of the factor VIII gene is a frequent cause of severe hemophilia A by Richard D. Bagnall, Naushin Waseem, Peter M.
Chapter 14 Bioinformatics—the study of a genome
Novel PMS2 Pseudogenes Can Conceal Recessive Mutations Causing a Distinctive Childhood Cancer Syndrome  Michel De Vos, Bruce E. Hayward, Susan Picton,
A spliceosomal intron of mitochondrial DNA origin
Volume 64, Issue 6, Pages (June 2016)
Tiago R. Matos, Menno A. de Rie, Marcel B.M. Teunissen 
Volume 150, Issue 7, Pages e5 (June 2016)
by Wen-feng Xu, Zhi-wei Xie, Dominic W. Chung, and Earl W. Davie
Supplemental Figure S1. Alignment of drimenol synthase amino acid sequences from P. hydropiper and V. officinalis. Amino acid sequences were aligned with.
Mutations in the Liver Glycogen Phosphorylase Gene (PYGL) Underlying Glycogenosis Type VI (Hers Disease)  Barbara Burwinkel, Henk D. Bakker, Eliezer Herschkovitz,
Structure of an LDLR-RAP Complex Reveals a General Mode for Ligand Recognition by Lipoprotein Receptors  Carl Fisher, Natalia Beglova, Stephen C. Blacklow 
HOPX: The Unusual Homeodomain-Containing Protein
HKAP1.6 and hKAP1.7, Two Novel Human High Sulfur Keratin-Associated Proteins are Expressed in the Hair Follicle Cortex  Yutaka Shimomura, Noriaki Aoki,
Genetic Heterogeneity of Cutis Laxa: A Heterozygous Tandem Duplication within the Fibulin-5 (FBLN5) Gene  Dessislava Markova, Yaqun Zou, Franziska Ringpfeil,
Volume 5, Issue 1, Pages (January 1997)
Basic Local Alignment Search Tool
Volume 64, Issue 6, Pages (June 2016)
Debanu Das, Millie M Georgiadis  Structure 
Evolution of natural killer cell receptors
Volume 113, Issue 5, Pages (May 2003)
Volume 17, Issue 5, Pages (May 2009)
Analysis of an exon 1 polymorphism of the B2 bradykinin receptor gene and its transcript in normal subjects and patients with C1 inhibitor deficiency 
Volume 117, Issue 3, Pages (September 1999)
Origin of Immunoglobulin Isotype Switching
Size Polymorphisms in the Human Ultrahigh Sulfur Hair Keratin-Associated Protein 4, KAP4, Gene Family  Naoyuki Kariya, Yutaka Shimomura, Masaaki Ito 
Figure 1: The full-length cDNA and deduced amino acid sequences of Lysozyme C and amino acid sequences from rock bream, Oplegnathus fasciatus. The primers.
Supplemental Figure 3 A B C T-DNA 1 2 RGLG1 2329bp 3 T-DNA 1 2 RGLG2
Volume 15, Issue 1, Pages (January 2007)
Identification, description, and expression of E7-less STING isoforms.
Schematic diagrams of genomic structure, the strategy for genomic cDNA cloning, and molecular characterization of unique features of three emergent U.S.
Nadine Keller, Jiří Mareš, Oliver Zerbe, Markus G. Grütter  Structure 
G. Charles Ostermeier, Ph. D. , Robert J. Goodrich, B. S. , Michael P
Hiroaki Matsunami, Linda B Buck  Cell 
Volume 20, Issue 2, Pages (February 2012)
Error-Prone DNA Polymerases
Sex-Linked period Genes in the Silkmoth, Antheraea pernyi
Rita Pancsa, Daniele Raimondi, Elisa Cilia, Wim F. Vranken 
Novel PMS2 Pseudogenes Can Conceal Recessive Mutations Causing a Distinctive Childhood Cancer Syndrome  Michel De Vos, Bruce E. Hayward, Susan Picton,
Takahiro Watanabe, Kunihiko Tamaki 
Tertiary Structure of Destrin and Structural Similarity between Two Actin-Regulating Protein Families  H Hatanaka, K Ogura, K Moriyama, S Ichikawa, I.
Characterization and Mutation Analysis of Human LEFTY A and LEFTY B, Homologues of Murine Genes Implicated in Left-Right Axis Development  K. Kosaki,
Identification of the GCS1 ortholog in Gonium pectorale.
Stella Plakidou-Dymock, David Dymock, Richard Hooley  Current Biology 
Bruce L. Zuraw, MD, Jack Herschbach, BA 
Hideki Kusunoki, Ruby I MacDonald, Alfonso Mondragón  Structure 
Volume 17, Issue 5, Pages (May 2009)
Identification of Skn-1n, a Splice Variant Induced by High Calcium Concentration and Specifically Expressed in Normal Human Keratinocytes  Koji Nakajima,
Structure of CD94 Reveals a Novel C-Type Lectin Fold
Structural insights based on chimeric Alp4-GCP2 analysis.
Mutation of the Ca2+ Channel β Subunit Gene Cchb4 Is Associated with Ataxia and Seizures in the Lethargic (lh) Mouse  Daniel L Burgess, Julie M Jones,
Predicted Amino Acid Sequence of the Tomato Cf-4 Protein (Thomas et al
Figure Genetic characterization of the novel GYG1 gene mutation (A) GYG1_cDNA sequence and position of primers used. Genetic characterization of the novel.
A, Schematic diagram of identified splice variants of PD-L1.
Debanu Das, Millie M Georgiadis  Structure 
Fig. 3 Genome editing of the MSTN gene.
Presentation transcript:

Fig. S1 A622 1 MVVSEKSKILIIGGTGYIGKYLVETSAKSGHPTFALIRESTLKNPEKSKLIDTFKSYGVT 60 A622L V V A LLFGDISNQESLLKAIKQVDVVISTVGGQQFTDQVNIIKAIKEAGNIKRFLPSEFGFDVD 120 A622L A A HARAIEPAASLFALKVRIRRMIEAEGIPYTYVICNWFADFFLPNLGQLEAKTPPRDKVVI 180 A622L 121..H K A FGDGNPKAIYVKEEDIATYTIEAVDDPRTLNKTLHMRPPANILSFNEIVSLWEDKIGKTL 240 A622L MK E A EKLYLSEEDILQIVQEGPLPLRTNLAICHSVFVNGDSANFEVQPPTGVEATELYPKVKYT 300 A622L H......M...V I..S A TVDEFYNKFV 311 A622L Y (Identity=95.5%, Similarity=98.4%)

Fig. S A622 A622L (73.0%)(85.9%)(68.4%)(43.3%) (98.4%) (98.5%)(97.1%)(96.6%) (93.4%) (nt)

Fig. S3 Red: A622 Blue: ObEGS1+NADPH Green: PtPCBER

Supplementary Figures Figure S1. Alignment of the amino acid sequences of A622 and A622L. Dots indicate the A622L residues that are identical to those of the A622 sequence. Figure S2. Diagram of the A622 and A622L genes. Filled boxes indicate coding exons, whereas the lines show introns. The numbers indicate the lengths of the exons and introns in nucleotides. The sequence identity values between corresponding gene segments are indicated in parentheses. The A622L genomic sequence was deposited in GenBank under the accession number AB Figure S3. Superposition of the polypeptide-chain backbones of A622, ObEGS1 (PDB entry no. 2R6J), and PtPCBER (PDB entry no. 1qyc). The color coding is shown in the inset. The NADPH cofactor in ObEGS1 is shown in the ball mode. The structural modeling of A622 protein and the comparison with other PIP-family proteins were carried out using MODELLER 8v2 (University of California San Francisco, San Francisco, CA) and PyMol version 0.99rc6 (DeLano Scientific LLC, Palo Alto, CA) software, respectively. Supplementary Materials and Methods Determination of the A622L genomic and cDNA sequences Since the A622L genomic sequence in the N. tabacum genome database ( was incomplete, genomic PCR was carried out with the primers 5’- CCTCCACCTTAACCCGAAGC and 5’-TGCAGATTGATGTCGACAAC, using 10 ng of N. tabacum genomic DNA and TaKaRa Ex Taq DNA polymerase (TaKaRa Bio) under the following conditions: 30 cycles of 94 °C for 30 sec, 55 °C for 30 sec, and 72 °C for 1.5 min. The PCR product was sequenced directly by using 5’-TCAGAGAAAGCACACTCGT and 5'-GCATATGGCCAAATTGACT. To determine the cDNA sequence of A622L, RT-PCR was carried out with 5’- CCTCCACCTTAACCCGAAGC and 5’-TGCAGATTGATGTCGACAAC, using 1 ng of N. tabacum root tissue cDNA and TaKaRa Ex Taq DNA polymerase (TaKaRa Bio) under the following conditions: 30 cycles of 94 °C for 30 sec, 55 °C for 30 sec, and 72 °C for 1 min. The PCR product was cloned into pGEM-T easy vector (Promega, Madison, WI), and sequenced using 5’-TCAGAGAAAGCACACTCGT and 5'- GCATATGGCCAAATTGACT.