KEVIN C. GROSS,1 PAUL G. SEYBOLD,1 CHRISTOPHERM. HADAD2 1Department of Chemistry, Wright State University, Dayton, Ohio 45435 2Department of Chemistry,

Slides:



Advertisements
Similar presentations
Objectives To learn about the shapes of the s, p and d orbitals
Advertisements

Integrals over Operators
Introduction to Molecular Orbitals
AMBER Parameters for Pseudouridine Delon Wilson Advisor: J. SantaLucia.
Ion Solvation Thermodynamics from Simulation with a Polarizable Force Field Gaurav Chopra 07 February 2005 CS 379 A Alan GrossfeildPengyu Ren Jay W. Ponder.
10-1 Chemistry 2060, Spring 2060, LSU Chapter 10: Amines Sections
CHAPTER 1 STRUCTURE DETERMINES PROPERTIES. ATOMIC STRUCTURE  number of protons determines the element  combinations are possible, with a constant number.
Reversed Phase HPLC Mechanisms Nicholas H. Snow Department of Chemistry Seton Hall University South Orange, NJ 07079
275 Chapter 12: Reactions of Arenes: Electrophilic Aromatic Substitution 12.1: Representative Electrophilic Aromatic Substitution Reactions of Benzene.
بسم الله الرحمن الرحيم UMM AL-QURQ UNIVERSITY Faculty of Medicine Dep. Of BIOCHEMISTRY.
Organic Chemistry Organic Chemistry (10 lectures) Book:
Part 1 CHM1C3 Resonance and Inductive Effects ++ ++ ++ ++ --
Atomic and Molecular Orbitals l The horizontal rows of the periodic table are called Periods. l Each period represents a different quantum energy level.
Lectures Molecular Bonding Theories 1) Lewis structures and octet rule
COVALENT BONDS & MOLECULAR STRUCTURE. CHEMICAL BONDS Form between atoms resulting in molecules (covalent bonds, sharing of electrons). Form between ions.
Francis A. Carey, Organic Chemistry, Fourth Edition. Copyright © 2000 The McGraw-Hill Companies, Inc. All rights reserved. Plot of potential energy versus.
Organic Chemistry 4 th Edition Paula Yurkanis Bruice Chapter 1 Electronic Structure and Bonding Acids and Bases Irene Lee Case Western Reserve University.
Sec. 8.5: Electronegativity and Bond Polarity
Molecular Orbital Theory
Molecular Compounds Unit 7. Covalent Bonds Sharing pairs of electrons Sharing pairs of electrons Covalent bonds are the intra-molecular attraction resulting.
Amino acids as amphoteric compounds
Calculation of Molecular Structures and Properties Molecular structures and molecular properties by quantum chemical methods Dr. Vasile Chiş Biomedical.
Chapter 8: Organic Acids and Bases
Physical Chemistry 2 nd Edition Thomas Engel, Philip Reid Chapter 23 The Chemical Bond in Diatomic Molecules.
Leapfrog: how to solve Newton’s 2 nd Law on the computer credit: Zhijun Wu, Department of Mathematics, Iowa State University Newton’s equations.
Theoretical Study of Photodissociation dynamics of Hydroxylbenzoic Acid Yi-Lun Sun and Wei-Ping Hu* Department of Chemistry and Biochemistry, National.
Electrostatic Effects in Organic Chemistry A guest lecture given in CHM 425 by Jack B. Levy March, 2003 University of North Carolina at Wilmington (subsequently.
Orbitals and Quantum Numbers. Objective Students will be able to describe the quantum numbers n, l, and m l used to define an orbital in an atom, and.
Comparative Study of Three Methods of Calculating Atomic Charge in a Molecule Wanda Lew Heather Harding Sharam Emami Shungo Miyabe San Francisco State.
1-1 1 Copyright © 2000 by John Wiley & Sons, Inc. All rights reserved. Introduction to Organic Chemistry 2 ed William H. Brown.
Carbon Compounds Organic Chemistry. Structural Models and Diagrams Used to show the structure of the atoms in the molecule Isomers: Different structures.
Applications I: Partial Charges and Potential Energy Surface Scans Lecture CompChem 5 Chemistry 347 Hope College.
Chapter 1 Chemical Bonding. 1.1 Atoms, Electrons, and Orbitals.
Dipole Moments and Polar Molecules 10.2 H F electron rich region electron poor region    = Q x r Q is the charge r is the distance between charges.
Dr. Wolf's CHM 201 & Chapter 11 Arenes and Aromaticity.
9 9-1 Copyright © 2000 by John Wiley & Sons, Inc. All rights reserved. Introduction to Organic Chemistry 2 ed William H. Brown.
Molecular shapes A simple matter of balls and sticks.
Atomic Quantum Mechanics - Hydrogen Atom ( ) Assuming an atom doesn’t move in space (translate), the SE is reduced to solving for the electrons.
WWU- Chemistry Substituent Effects on the Acidities of Carboxylic Acids.
Chapter 8: Simple Linear Regression Yang Zhenlin.
Antal Zoltan-PhD candidate 6304-Computational Chemistry March 2010.
Organic Pedagogical Electronic Network Molecular Orbitals Mariana Neubarth Coelho Edited by Margaret Hilton Honors Organic Chemistry University of Utah.
CHAPTER 1 INTRODUCTION AND REVIEW. SUCROSE, “SUGAR” Chapter 1: Introduction and Review.
PART 1 DEFINITION AND IMPORTANCE OF PERIODIC TRENDS.
Introduction to Organic Chemistry Section Organic Chemistry The chemistry of carbon compounds Not including metal carbonates and oxides Are varied.
1 Chemistry for Engineering Logistics THE STRUCTURE OF THE ATOM 1. General Information 2. Sub-atomic Particles 3. Rutherford-Bohr Model of the Atom Assoc.
2/15/ :56:02 AMS. Aravamudhan NMRS2015 GNDU1 The contents of the slides 2-6 have been gathered provisionally for the occasion of NMRS2015, GNDU,
Unravelling the assignments of the vibrations of the monosubstituted benzenes Adrian M. Gardner and Timothy G. Wright 67 th International Symposium on.
A chemical bond’s character is related to each atom’s attraction for the electrons in the bond. Section 5: Electronegativity and Polarity K What I Know.
Aromaticity: Reactions of Benzene and Substituted Benzenes
Organic 2 Dr. Thoraya A.Farghaly.
Bell Work  Bonding / Chap 8 Reading Is Due Today!  Pick Up Note Sheet  Pick Up & Complete Bell Work.
Quantum Mechanical Description of Molecules Glenn V. Lo Department of Physical Sciences Nicholls State University.
Population Analysis.
5 Linear Free-Energy Relationships.
Molecular Models.
Structures and Properties
Example: water (bent shape).
1.1 Atoms, Electrons, and Orbitals
Chapter 14 Aromatic Compounds
Experiments show O2 is paramagnetic
Benzene & Aromatic Compounds
International Symposium on Molecular Spectroscopy, June 22-26, 2015
Chapter 14 Aromatic Compounds
Covalent Bonds Main Concept:
Biochemistry: The Chemical Basis of Life
Molecules 3.3.
Molecules 3.3.
Molecules 3.3.
Chapter 6.5, 7.1, 7.2 – Chemical Bonding – Fundamentals and Theories
Presentation transcript:

KEVIN C. GROSS,1 PAUL G. SEYBOLD,1 CHRISTOPHERM. HADAD2 1Department of Chemistry, Wright State University, Dayton, Ohio Department of Chemistry, The Ohio State University, Columbus, Ohio International Journal of Quantum Chemistry, Vol. 90, 445–458 (2002) © 2002 Wiley Periodicals, Inc.

Introduction Any definition of atomic charge in a molecule is immensely useful in its ability to correlate with the experimental properties such as pKa of a compound. A good correlation between aqueous acidity and easily calculated gas-phase properties is especially convenient if the atomic charge method is practical for rapid evaluation. For substituted anilines and phenols, the charges on the functional group heavy atom (e.g., N in – NH 2 or the O - of the OH) and on the acidic hydrogens(e.g., in –NH 3 + or OH) can serve as good regression parameters in determination of the pKa of the compound.

I ntroduction In the phenol series, the –OH group pKa varies with substitution, increasing with electron-donating group (EDGs) and decreasing with electron-withdrawing groups (EWGs). Three population analysis were examined for their ability to generate charges that correlate with the experimental pKa’s for a series a para and meta monosubstituted anilines and phenols. the Mulliken charge Q(H+) Mul, the natural population charge Q(H+) NPA electrostatic-potential Q(H+) ESP Geometry optimizations were carried out at the 6-31G(D) level for each compound.

Definitions Mulliken Analysis Divides overlap population equally between the two atoms of a bond and thus has advantage of simplicity. However, its results vary with the basis set employed inducing sometimes unnatural and ineffective results. Natural Population Analysis (NPA) The analysis of the electron density distribution in a molecular system is based on the orthonormal natural atomic orbitals. Natural populations, ni(A) are the occupancies of the natural atomic orbitals which rigorously satisfy the Pauli exclusion principle: 0 < ni(A) <2. Electrostatic Potential Analysis (ESP) Assigns point charges to the atomic centers in order to best reproduce the electrostatic potential.

Aniliniums m-Aminom- Methoxym- Nitro p-Nitrop- Aminop- Methoxy

Phenols m- Aminom- Methoxym- Nitro p-Amino p- Methoxyp- Nitro

4-tert-amylphenol 4-phenylphenol 4-ethylphenol4-hydroxybenzaldehyde Compounds used to verify the effectiveness of estimating pKa using different atomic charge methods.

Plots of the averaged amoni-group hydrogen pKa vs. charge using several charge definitions for a series of monosubstituted aniliniums: the Mulliken charge Q(H+) Mul, the natural population charge Q(H+) NPA, and the electrostatic-potential Q(H+) ESP. Results

Plots of the phenolic hydrogen pKa vs. charge using several charge definitions for a series of monosubstituted phenols: Q(H+) Mul, Q(H+) NPA, and Q(H+) ESP. and Q(H+) ESP. Results

Plots of the phenolic hydrogen pKa vs. charge using several charge definitions for a series of the para monosubstituted phenols as indicated on the graphs: Q(H+) Mul, Q(H+) NPA, and Q(H+) ESP. Results

These plots indicate the effectiveness of determining pKa values through different atomic charge methods by using the actual experimental values (known) and the training set of data points. Results Actual experimental values Training set of data points (phenols)

Conclusion NPA and Mulliken charges are observed to be quite useful and effective measures in correlating with the observed pKa’s of the known compound. ESP produced less effective results for the succesful correlation with the observed pKa’s as indicated by the regression results. Atomic charges methods are very useful for rapid evaluation and determination of the pKa for anilines and phenols as observed experimentally.

Thank You