Biology in Silico : Online Tools for “Omics” WCRC RETREAT SEPTEMBER 6TH, 2014 ANSUMAN CHATTOPADHYAY, PHD HEAD, MOLECULAR BIOLOGY INFORMATION SERVICE HEALTH.

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Presentation transcript:

Biology in Silico : Online Tools for “Omics” WCRC RETREAT SEPTEMBER 6TH, 2014 ANSUMAN CHATTOPADHYAY, PHD HEAD, MOLECULAR BIOLOGY INFORMATION SERVICE HEALTH SCIENCES LIBRARY SYSTEM UNIVERSITY OF PITTSBURGH

Topics HSLS Molecular Biology Information Service Library Licensed Bioinformatics Tools Search Engine, InfoBoosters & ReadingAssist

Information Overload 285K Breast Cancer 110K Schizophrenia 11K BRCA1 73 K p53

Information Overload

Molecular Biology Information Service

University of Nebraska-Lincoln PhD. in Biochemistry Protein synthesis initiation in eukaryotic system Vanderbilt University School of Medicine, Nashville Research Fellow Epidermal Growth Factor (EGF) mediated signal transduction Cellomics Inc., Pittsburgh Knowledge Engineer Information Specialist in Molecular Biology and Genetics HSLS, University of Pittsburgh Ansuman Chattopadhyay, Ph.D Present Head, Molecular Biology Information Service HSLS, University of Pittsburgh

Bioinformatics Health Sciences Libraries 1994 : University of Washington 2002: University of Pittsburgh 2006 … University of Florida, Gainesville Washington University, St. Louis Northwestern University, Chicago University of Southern California, LA University of California, San Francisco Harvard University University of Rochester ……………………

WorkshopsWeb Dev Software Licensing Bioinformatics Consultations Molecular Biology Information Service 4

In silico Support Literature Search Sequence Analysis Omics Data Analysis

Molecular Biology Information Service HSLS Licensed Bioinformatics Software

Software Access

ePath3D

Bioinformatics Workshops CLCBio – RNA Seq.. October 7 th, 2014 CLCBio – Exome, Whole Genome Seq, October 8 th,2014 UCSC Genome Browser Road Show.. December 4 th,5 th, 2014

Life Sciences Search Engine InfoBoosters ReadingAssist Web Development

Search Engine for Life Scientists

Database Issue Web Server Issue Software and Database articles Search Engine for Life Scientists

Databases/Tools : CRISPR

how is it calculated ? what is its function ? what is its structure? Challenges for Biomedical Scientists

InfoBoosters

InfoBoosters

Infoboosters

InfoBoosters How is it calculated ? What is its function ? What is its structure?

Data Integration InfoBoosters

Create Your Own InfoBooster

InfoBooster Generator Clinical Trials.gov

InfoBooster Generator Go to the Clinical Trials.gov Website and do a search with a one-word search term, such as asthma 1 1

InfoBooster Generator COPY the URL from the search result page 2 2

InfoBooster Generator

InfoBooster Generator

ReadingAssist

Contact US

Thank You