Four novel Rhodococcus erythropolis phages were isolated from northeast Louisiana area soil samples. To date, Rhodoccocus phages Chewy VIII and Trina have.

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Four novel Rhodococcus erythropolis phages were isolated from northeast Louisiana area soil samples. To date, Rhodoccocus phages Chewy VIII and Trina have been sequenced (Illumina Sequencing, University of Pittsburgh) and their genomes annotated with the DNA Master bioinformatics platform. Chewy VIII is a siphoviridae phage with 69,165 bp including a 10 bp 3’ overhang, 100 open reading frames (ORFs) and no tRNA gene coding regions. Trina is 139,262 bp including a 2860 bp terminal repeat and has 249 ORFs and 25 tRNA genes. While functional gene calls can be identified for both genomes, the majority of open reading frames have no sequence homology to any known gene product currently found in GenBank and are consequently labeled as ‘orphams’. Phamerator comparison of a number of recently sequenced Rhodococcus phages indicates that both ULM isolates are significantly different from other existing isolates and are currently designated as ‘Singletons’. Chewy has some BLASTn hits to Gordonia phages but only ~20% query coverage. While Trina is about the same size as Rhodococcus phages Grayson and Peregrin, it is only ~10% similar at the nucleotide level. A BLASTn comparison of Trina and Chewy VIII against the Mycobacteriophage database revealed that Trina displays some limited similarity to L1 cluster mycobacteriophages while Chewy VIII shows a higher degree of similarity to M cluster phages. Annotation of Rhodococcus erythropolis Phage Singletons ChewyVIII and Trina Gillian Holder, Jordan Wagner, Victoria Albritton, Martiana Beach, Christian Bonner, Caleb Green, Makenzie Harrell, Alyssa Juneau, Gabrielle Labat, Shelby Lawrence, Daniel Myers, Anthony Nowell, Zachary Palowsky, Makayla Peoples, London Peterson-Gross, Shelby Rybicki, Colbren Thomas, Naadia West, Dezirea Williams, G. Brooke Morgan, Fernanda L. Alonzo, Paul D. Wiedemeier, Allison M.D. Wiedemeier, Chris R. Gissendanner, and Ann M. Findley Biology, School of Sciences and Basic Pharmaceutical Sciences, School of Pharmacy University of Louisiana at Monroe, Monroe, LA ABSTRACT PLAQUE MORPHOLOGY EM PROFILES PHAMERATOR COMPARISON BLASTn SEQUENCE COMPARISON ChewyVIII produces lytic plaques with 24 hr incubation. Phage Isolate was purified from an enriched soil sample from Benton, LA. Trina produces small lytic plaques after 48 hr incubation. Phage isolate was purified from an enriched soil sample from Benton, LA. Analysis of Trina genome compared to Rhodococcus phages Peregrin and Grayson. Analysis of ChewyVIII genome compared to Rhodococcus phages ReqiPine5 and E3. FUNCTIONAL GENE CALLS STATEMENT OF PROBLEM Utilizing protocols provided found on phagesdb.org, ULM SEA PHAGES students isolated four Rhodococcus erythropolis phages – Chewy VIII, Trina, Measels, and JohnSpot. Chewy VIII and Trina were sequenced and while both of these Rhodococcus phage singletons display limited sequence homology to known Actinobacteriophages, they do display multiple BLAST hits to phages that infect Rhodococcus, Gordonia, Streptomyces, and Mycobacterium hosts. As such, Chewy VIII and Trina may present good candidates for the study of lateral gene transfer among the Actinobacteriophages. Acknowledgments: This work was supported by the HHMI – SEA – Phage Hunters Program and Louisiana INBRE program. CHEWY VIII Putative Functions ORF Alignment/E/QueryPutative Function %/6.8/24:18Sulfur transferase %/0.26/37:12AT Hook Motif %/9.05/Carbamoyl dehydratase %/7.16/66:13Aldehyde activator %/1.64/19:651Ubiquitin thioesterase %/0.00/27:6 Ribonucleotide diphosphate reductase - beta subunit %/0.48/9:105 Chromodomain-helicase- DNA-binding protein %/2.21/6:173 CHRD domain-containing protein %/0.00/1:1 (FAD dependent) Thymidylate synthase %/3e-20/64:76 Collagen triple helix family protein %/0.00/1:21Terminase %/0.00/7:10Tail protein %/3.3e-24/8:7Tail protein %/0.64/13:4Sporulation protein %/0.00/3:34 DNA polymerase - alpha subunit %/0.00/5:25DNA methylase %/0.37/60:36Translocase %/4e-21/5:7AAA-ATPase %/0.00/12:16PAPS reductase /0.00/127:101Helicase 96 81%/8.83/53:663ATP-dependent exonuclease %/3.30/17:252l-asparaginase %/9.3/6:142Cobalt ABC transporter ATP- binding protein Trina tRNA NumberAmino acid charge 1Glycine 2Glutamate 3Asparagine 4Lysine 5 6 7Arginine 8Glutamine 9Histidine 10Serine 11Threonine 12Threonine 13Glycine 14Tryptophan 15Cysteine 16Isoleucine 17Valine 18Alanine 19Asparagine 20Proline 21Phenylalanine 22Leucine 23Leucine 24Leucine 25Isoleucine TRINA Putative Functions ORF Alignment/E/Query Putative Function 224.2%/0.92/3:64Acyltransferase 322.6%/2.52/35:132Transfer protein 62.9%/4.24/5:1347Chemotaxis protein 712.7%/4.83/9:108Secretion protein 922%/0.32/15:248Sulfotransferase 109.1%/4.63/26:465Ribonuclease R, partial %/1.25/20:347DNA primase %/9.99/26:104Transcription regulator %/7.77/6:1423-oxoacyl-ACP-reductase 204.6%/4.09/11:608Aminopeptidase %/0.00/2:3DNA methylase %/4.64/1:27Transcription regulator 2437%/5.93/7:80Purine phosphorylase %/0.00/3:2Nicotinate phosphoribosyl- transferase %/0.28/12:404Nitrate reductase 305.6%/8.39/2:404Carboxypeptidase 3235%/4.2/43:750Polymerase /1.4e-26RNA methylase transferase 3491%/6.3/13:216Adenylate cyclase 3711%/8.21/4:384Helicase %/1.0e-29/5:6ADP-ribosyllation protein %/0.00/2:4FAD-dependent thymidylate synthase %/8.2e-28/33:47Resucritation-promoting factor %/5.3e-30/28:68Methyltransferase 55100%/0.00/1:1Glycosyl-transferase %/0.00/5:6Ribonucleoside- diphosphate reductase, alpha subunit %/0.31/43:85l-asparaginase %/1.2e-41/46:29Portal protein %/0.00/7:2Maturation protease %/0.00/3:2Major capsid protein %/1.15/10:80Kinase %/0.17/16:58Transposase %/2.8e-39/246:52Minor tail protein %/0.08/1:2550s ribosomal protein %/0.00/3:2Minor tail protein %/0.00/3:2Metallophosphoesterase 9214%/8.58/29:41Intermediate filament tail protein 9597%/0.00/27:4DNA helicase %/8.3e-40/2:17DNA primase 9927%/0.00/5:6DNA polymerase III %/0.00/10:301DNA polymerase III %/0.85/11:139Hydrogenase nickel incorporation protein %/0.00/1:1Rec-A-like Recombinase %/6.6e-31/6:8Terminase association HNH endonuclease 13557%/4e-67/5:7Actinase %/6.03/3:82Uroporphyrin-III methyltransferase %/1.77/12:18Epimerase %/4.50/7:2603-dehydroquinate synthase %/0.06/12:110Nuclease %/2.09/28:269DNA polymerase III beta subunit 2045%/1.47/16:307Putative alpha-glycan- water dikinase %/7.60/38:69Iron ABC transporter permease %/4e-25/4:8Response regulator protein %/1.60/3:110DNA binding protein %/10.0/21:3Ribose ABC transporter auxiliary component %/5.68/2:158Alpha-glucosidase %/1.99/22:15Adenosylmethionine-8- amino-7-oxonoanoate aminotransferase 23616%/0.085/6:246Histinidol-phosphate aminotransferase 23755%/2.67/11:45ABC-2-transporter 24034%/0.65/11:19RNA/thiamine triphosphate 24527%/8.02/7:167ABC transporter sunstrate- binding protein %/0.47/3:63Phospholipid/glycerolacyltr ansferase %/1.20/110:291Translocation TolB protein PHAGE ENZYME TOOL OUTPUT - Explanation BLASTn results for Trina show limited sequence homology with Rhodococcus, Streptomyces, Gordonia, and Mycobacterium phages. BLASTn results for Chewy VIII show limited sequence homology with Gordonia, Rhodococcus, Streptomyces, and Mycobacterium phages. Chewy VIII Trina