Roles and Goals Greg Riccardi. iDigBio People University of Florida o Larry Page, Jose Fortes, Pamela Soltis, Bruce McFadden, Renato Figueiredo, Reed.

Slides:



Advertisements
Similar presentations
DRIVER Building a worldwide scientific data repository infrastructure in support of scholarly communication 1 JISC/CNI Conference, Belfast, July.
Advertisements

IDigBio is funded by a grant from the National Science Foundation’s Advancing Digitization of Biodiversity Collections Program (Cooperative Agreement EF ).
1 Sharing Data decisions - opportunities - options support from NSF grant: Advancing Digitization of Biological Collections Program (#EF ) Deborah.
IDigBio Minimum Information Standards for Scientific Collections (MISC)/Authority Files Working Group Gil Nelson Andréa Matsunaga (on behalf of the WG)
EU BON citizen science gateway Veljo Runnel University of Tartu Natural History Museum.
GLOBAL BIODIVERSITY INFORMATION FACILITY Greg Riccardi Co-chair 9 November Outcomes of the GBIF LSID-GUID Task Group.
This material is based upon work supported by the National Science Foundation under Cooperative Agreement EF Any opinions, findings, and conclusions.
NSF EF Welcome to Summit III University of Florida Florida State University.
1st iDigBio – BRIT Hackathon iDigBio Augmenting Optical Character Recognition Working Group (AOCR wg) February 13 – 14, 2013.
Building a Data Sharing Community. The Vertebrate Networks Est. 1999, collections (2011) Est collections (2011) Est collections.
SERNEC Image/Metadata Database Goals and Components Steve Baskauf
Drivers for a PRAGMA Biodiversity Science Expedition Reed Beaman Florida Museum of Natural History University of Florida.
Advanced Computing and Information Systems laboratory iDigBio Cloud and Appliances: Concept, Processes and Progress Jose Fortes (on behalf of the iDigBio.
US NITRD LSN-MAGIC Coordinating Team – Organization and Goals Richard Carlson NGNS Program Manager, Research Division, Office of Advanced Scientific Computing.
What we learned while building DLESE Katy Ginger Metadata Architect, Meteorologist, Instructional Designer.
Update from the Entomological Society of America (ESA) Systematics, Evolution, and Biodiversity (SysEB) Section Symposium: From Voucher.
IDigBio is funded by a grant from the National Science Foundation’s Advancing Digitization of Biodiversity Collections Program (Cooperative Agreement EF ).
Research Coordination, Scientific Community Outreach, Education & Public Outreach Pamela S. Soltis Co-PI & iDigBio Director for Research FLMNH, University.
A Proposal for a Distributed Earth Observation Data Network Matthew B Jones UC Santa Barbara National Center for Ecological Analysis and Synthesis (NCEAS)
The Digital Library for Earth System Education: A Community Resource
Data to Discovery The iPlant Collaborative Community Cyberinfrastructure for Life Science Nirav Merchant iPlant / University.
Advanced Computing and Information Systems laboratory The case for UF in PRAGMA Jose Fortes (also on behalf of Renato Figueiredo and Reed Beaman)
Updates from EOSDIS -- as they relate to LANCE Kevin Murphy LANCE UWG, 23rd September
METADATA QUALITY IN EUROPEANA , Den Haag.
Preserving Digital Collections for Future Scholarship Oya Y. Rieger Cornell University
Cyberinfrastructure Overview Core Cyberinfrastructure Team Matthew B. Jones National Center for Ecological Analysis and Synthesis (NCEAS) University of.
University of Florida Florida State University
Standards and tools for publishing biodiversity data Yu-Huang Wang June 25, 2012.
IPlant cyberifrastructure to support ecological modeling Presented at the Species Distribution Modeling Group at the American Museum of Natural History.
IDigBio is funded by a grant from the National Science Foundation’s Advancing Digitization of Biodiversity Collections Program (Cooperative Agreement EF ).
ESIP Federation Air Quality Cluster Partner Agencies.
ADBC: Background, Broader Impacts and Opportunity Anne Maglia Program Director, Division of Biological Infrastructure National Science Foundation
GEOSS Common Infrastructure Internal Structure and Standards Steven F. Browdy (IEEE)
National Center for Supercomputing Applications Barbara S. Minsker, Ph.D. Associate Professor National Center for Supercomputing Applications and Department.
Overview PlantCollections – Publish information about public garden collections – Using existing infrastructure Morphbank – Goals and capabilities of.
Laura Russell Programmer VertNet Buenos Aires (Argentina) 28 September 2011 Training course on biodiversity data publishing and.
“A Library outranks any other one thing a community can do to benefit its people.” --Andrew Carnegie.
Breakout # 1 – Data Collecting and Making It Available Data definition “ Any information that [environmental] researchers need to accomplish their tasks”
IDigBio is funded by a grant from the National Science Foundation’s Advancing Digitization of Biodiversity Collections Program (Cooperative Agreement EF ).
IDigBio Summit meeting Judith E. Skog Biological Sciences Directorate Office of the Assistant Director Emerging Frontiers Division.
Context: The Strategic Plan for Establishing the Network Integrated Biocollections Alliance Judith E. Skog, Office of the Assistant Director, Biological.
OOI-CYBERINFRASTRUCTURE OOI Cyberinfrastructure Education and Public Awareness Plan Cyberinfrastructure Design Workshop October 17-19, 2007 University.
Implementing a National Data Infrastructure: Opportunities for the BIO Community Peter McCartney Program Director Division of Biological Infrastructure.
IDigBio Georeferencing Working Group (GWG) Summit 2012 October 23 – 24 reporting: David Bloom, Shari Ellis, Debbie Paul.
Riccardi: DIALOGUE Workshop August 1, 2005 Supported by NSF BDI 1 Representing and Using Phylogenetic Characters in Morphbank Greg Riccardi, David Gaitros,
Goals 1.Ensure adequate supply of computing professionals 2.Achieve broader participation in the field Integrative Computing Education and Research: Preparing.
This material is based upon work supported by the National Science Foundation under Cooperative Agreement EF Any opinions, findings, and conclusions.
GLOBAL BIODIVERSITY INFORMATION FACILITY Vishwas Chavan Senior Programme Officer for DIGIT 10 th Meeting of the GBIF Participant Node Managers Committee.
SERNEC - TCN: Current status, citizen science and outreach activities M.W. Denslow & Zack Murrell iDigBio Summit 2015 NSF Award
This material is based upon work supported by the National Science Foundation under Cooperative Agreement EF Any opinions, findings, and conclusions.
Working with Your Archive : Broadening Your User Community Robert R. Downs, PhD NASA Socioeconomic Data and Applications Center (SEDAC) Center for International.
Course on persistent identifiers, Madrid (Spain) Information architecture and the benefits of persistent identifiers Greg Riccardi Director Institute for.
A Shared Commitment to Digital Preservation and Access.
The National Digital Stewardship Alliance: Community, Content, Commitment.
NextGEOSS data hub incl. alpha release
RDA US Science workshop Arlington VA, Aug 2014 Cees de Laat with many slides from Ed Seidel/Rob Pennington.
GBIF Implementation Plan Highlights
EOSC MODEL Pasquale Pagano CNR - ISTI
DataNet Collaboration
Summit 2017 Breakout Group 2: Data Management (DM)
Flanders Marine Institute (VLIZ)
OntoMorphBankSter: Image-driven Ontology and/or Ontology-driven Image Annotation Greg Riccardi, Austin Mast Florida State U Dan Miranker, Ferner Cilloniz,
FDA Objectives and Implementation Planning
Natural History Collections (NHC) Biodiversity Data Informatics 101
Bird of Feather Session
Why IIIF? Shane Huddleston Jeff Mixter Dave Collins Product Manager
Brokering as a Core Element of EarthCube’s Cyberinfrastructure
Andrew Bentley Biodiversity Collections Network (BCoN) and
Cody W. Thompson, Ph.D. University of Michigan
BCoN Data Integration Workshop, University of Kansas, Feb 13-14, 2018
Presentation transcript:

Roles and Goals Greg Riccardi

iDigBio People University of Florida o Larry Page, Jose Fortes, Pamela Soltis, Bruce McFadden, Renato Figueiredo, Reed Beaman, Andrea Matsunaga, Alex Thompson, Matthew Collins, Jason Grabon, Shari Ellis, Kevin Love, Betty Dunkel, Kate Rachwal, Cathleen Bester Florida State University o Greg Riccardi, Austin Mast, Marcia Mardis, Gil Nelson, Casey McLaughlin, Deb Paul, Guillaume Jimenez

Mandate and Responsibility Provide portal access to collection information o Make information available and discoverable o Metadata and images Enable digitization and research o Facilitate digitization workflows o Oversee implementation of standards and best practices for digitization Be a client of digitization projects o Actively seek partners and data sources o Respond to cyberinfrastructure needs Engage communities o Collections o Research o Citizen science and education Support ADBC goals o Access to information o Support for collections

Some Vision Stuff Collection Information is completely available! o Engage, enable, ensure! iDigBio infrastructure works flawlessly o Digitization technology and workflows o Movement of information into collections cloud o Portal for discovery and sharing TCNs are successful o Successful operation of each TCN o Effective sharing among TCNs o Collaborative communities o Evaluation of effectiveness of digitization activities Broader community is engaged and served From Judy “Work beyond our comfort zone”

CI Stakeholders Domain Data Producers Infrastructure Providers Domain Service Providers Domain Data Consumers National/Global Data Aggregators 5 iDigBio Museums Amazon WS Google Microsoft Azure DataONE TCNs Collectors GBIF ALA Researchers Citizens Amazon Turk Georeferencing Imaging services Data quality Mapping EOL TCNs Government Translation OCR BISON NESCent Data Conservancy iPlant

Why Not Use GBIF? We will be extending the GBIF capabilities o Full record-level information discovery and delivery o Metadata harvesting protocols o GUID per record with persistence o Attribution metadata with all data records o Media information ala Audubon Core o Bi-directional portal Feed back from data users to providers (e.g. data quality) Usage analytics Attribution to providers from analysis Annotation management o Active repository technology Cloud computing infrastructure We will be a GBIF cyber infrastructure partner o E.g. IPT extension for Audubon Core o Darwin Core Archive delivery of query results

Engaging Community Solicit partners o Information providers o Tool providers o Current needs assessment from TCNs Cyberinfrastructure toolbox o Determine tool needs from partners o Acquire tools from projects and o Create installable, interoperable appliances from tools Sample tools o Specify as a consistent resource within communities o Morphbank image repository o Vertnet search engine o Atrium biodiversity information system o GBIF information provider toolkit (IPT) o Silver Biology tools for digitization and management

Support for Digitization Projects Advocate standard practices in digitization Use metadata standards Provide taxon name services Participate in workflow development Share digitization practices across domains Hold workshops for education and sharing Enable and encourage social networking and collaboration Enhance and develop tools o Seek additional funding

Education and Outreach Advance discovery and understanding while promoting teaching, training, and learning Courses, course materials, seminars and workshops developed as models Include and mentor students and professionals iDigBio graduate seminars, TCN workshops Broaden participation of underrepresented groups Enhance infrastructure for research and education o Go to” place for discovery and understanding of biological diversity

Research Use Cases Sample research questions o How are species distributed in geographical and ecological space? o What is the history of life on Earth? o What factors lead to speciation, dispersal, and extinction? o What are the impacts of climate change likely to be? o What information is needed for effective conservation strategies? Opportunities to Link Collections with o Evolution, Ecology, Paleobiology, Genomics, Living Collections

Summary Engage community to determine needs and capabilities Provide basic cyber infrastructure and information portal Interact with TCNs and other digitization projects to promote o Data standards o Best practices for digitization Enable research applications o Provideinformation access o Provide APIs for analysis tools o Feedback information to providers Lead education and outreach efforts Respond to community