NA-MIC National Alliance for Medical Image Computing CARMA Registration Salma Bengali, Alan Morris, Greg Gardner, Josh Cates, Rob MacLeod SCI Institute/CARMA Center University of Utah © 2012, All Rights Reserved

National Alliance for Medical Image Computing Learning Objective Cardiac MRI image registration using BRAINSFit in Slicer © 2012, All Rights Reserved

National Alliance for Medical Image Computing Current Workflow Fixed ImageMoving ImageRegistered Image

National Alliance for Medical Image Computing Slicer: Release Data: CARMA Slicer Extension Tutorial Data Required Materials © 2012, All Rights Reserved

National Alliance for Medical Image Computing Additional Sample Data 60 patients

National Alliance for Medical Image Computing Pre-requisite Tutorial © 2012, All Rights Reserved

National Alliance for Medical Image Computing Platforms © 2012, All Rights Reserved DevelopedTested

National Alliance for Medical Image Computing Overview © 2012, All Rights Reserved Load the module Load the dataset Image registration

National Alliance for Medical Image Computing Loading the Module Select View>Extension Manager in the menu bar (or push ⌘ 4) If the Extension Manager isn’t revealed, see the next 2 slides; otherwise, skip them

National Alliance for Medical Image Computing Loading the Module To load the Extension Manager, Select Edit>Application Settings in the menu bar (or push ⌘ 2)

National Alliance for Medical Image Computing Loading the Module Under the Extension menu, make sure ‘Enable extension manager’ is checked

National Alliance for Medical Image Computing Loading the Module Select CARMA in the sidebar and click the extensions

National Alliance for Medical Image Computing Loading the Module Restart to install the extension

National Alliance for Medical Image Computing Loading the Data Select ‘Choose Directory to Add’ in the pop-up menu

National Alliance for Medical Image Computing Loading the Data Select the directory containing your dataset

National Alliance for Medical Image Computing Loading the Data

National Alliance for Medical Image Computing Image Registration Output volume Input volumes { Parameter Sets

National Alliance for Medical Image Computing Image Registration Under the Imaging Modality, select the appropriate option. (In this example it is LGE-MRI to LGE-MRI)

National Alliance for Medical Image Computing Image Registration Indicate if input image volumes are cropped

National Alliance for Medical Image Computing Image Registration Apply the registration

National Alliance for Medical Image Computing Image Registration Viewer automatically updates to show the resulting output

National Alliance for Medical Image Computing Image Registration Advanced registration parameters can be adjusted to check for improvements in the registration result.

National Alliance for Medical Image Computing Conclusion This module can be used to register two cardiac MRI image volumes using BRAINSFit.