InfoBoosters: Connecting Texts with Databases BOOST BOX, DEC 9, 2014 NATIONAL NETWORK OF LIBRARIES OF MEDICINE, MIDDLE ATLANTIC REGION ANSUMAN CHATTOPADHYAY,

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Presentation transcript:

InfoBoosters: Connecting Texts with Databases BOOST BOX, DEC 9, 2014 NATIONAL NETWORK OF LIBRARIES OF MEDICINE, MIDDLE ATLANTIC REGION ANSUMAN CHATTOPADHYAY, PHD HEAD, MOLECULAR BIOLOGY INFORMATION SERVICE HEALTH SCIENCES LIBRARY SYSTEM UNIVERSITY OF PITTSBURGH

In silico Support Literature Search Sequence Analysis Omics Data Analysis

WorkshopsWeb Dev Software Licensing Bioinformatics Consultations Molecular Biology Information Service

InfoBoosters

InfoBoosters Why What How To Use To Create To Bundle

Research in Post-Genome Era Green etal., Nature 470, February 10, 2011

Information Overload 285K Breast Cancer 110K Schizophrenia 11K BRCA1 73 K p53

Molecular Databases and Bioinformatics Software

Gene: BRCA1 / BRAF/EGFR Structure Function Expression Genomic Context Disease- Association Multidimensional Data

Genes Mutations Drugs Clinical Trials Classifications Disease: Asthma cancer schizophrenia Multidimensional Data

Structure Function Expression Genomic Context Mutations One-Dimensional Reading Format

how is it calculated ? what is its function ? what is its structure? Challenges for Biomedical Scientists

On-Demand Information

Bookmarklets : bookmarks stored in a web browser that contains JavaScript commands to extend the browser's functionality. a bookmarklet might allow the user to select text on a page, click the bookmarklet, and be presented with a search engine results page for the search term selected. Software as a Bookmark

Bookmarklet : Software as a Bookmark

Mendeley’s Web Importer

InfoBoosters

How is it calculated ? What is its function ? What is its structure?

InfoBoosters: Connecting Texts with the Databases InfoBoosters

Create Your Own InfoBooster

Clinical Trials.gov

InfoBooster Generator Go to the Clinical Trials.gov Website and do a search with a one-word search term, such as asthma 1 1

InfoBooster Generator COPY the URL from the search result page 2 2

InfoBooster Generator

InfoBooster Generator

InfoBoosters Bundle

Reading Bundles

Create Your Own Bundle

Compatible Formats

FireFox for PDF

Mobile Compatible

Usage Total Page View: 1150 Average Time on Page: 00:05:23

Usage

Potential Use Biocuration Library Licensed Resource Promotion : Micromedex, ClinicalKey, Uptodate Teaching Tool : combine multiple Web addresses into one, an easy to distribute bookmarklet

InfoBoosters Pros 1.SIMPLE— Easy to use, create, & install 2.UNIVERSAL— Compatible w/most OS & browsers 3.SEAMLESS— Integrates published lit & other databases

InfoBoosters Con 1.Search term MUST be visible in the URL to work

Acknowledgements Peter Coles Chris Zarata Janis Elsts W-shadow.com Angie Zack Web & Application Programmer University of Pittsburgh Carrie Iwema Information Specialist in Mol Bio University of Pittsburgh

Thank You