Biological Sequences and Patents Chemical compounds and Patents Agenda Acknowledgements: FELICS is funded by the European.

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Presentation transcript:

Biological Sequences and Patents Chemical compounds and Patents Agenda Acknowledgements: FELICS is funded by the European Commission under FELICS, contract number (RII3) within the Research Infrastructure Action of the FP6 "Structuring the European Research Area" Programme. Additional funding has been provided by EMBL-EBI and the European Patent Office.

IQ Life sciences - Organizational Structure- DG1 Operations DG2 Operational Support DG 3 Boards of Appeal DG4 Administration DG5 Legal/Administration Affairs Patent Grant Automation IQ Life sciences International Affairs President Patent Administration  Introduction Services for Examiners Data Acquisition & Verification R&D

Sequence Listing Creation Research Publication Processing Biological Sequences and Patents  Biological Sequences and Patents

A Patent Application and its different parts SA Figures Claims Description Sequence Listing  Biological Sequences and Patents /Sequence Listing

Sequence Listing  Biological Sequences and Patents /Sequence Listing General Information Part Sequence(s) part

Standards Wipo ST25 General Information Sequence Part EMBLASN.1  Biological Sequences and Patents /Sequence Presentation Standards

The Submission Tool Submission Conversion Multilingual Formatting Verification  Biological Sequences and Patents /Sequence Presentation submission tool

The Submission Tool  Biological Sequences and Patents /Sequence Presentation submission tool

Sequence Listing Creation Research Publication Processing Biological Sequences and Patents

Front End Sequence Listing files (ST25) Online filing Paper Filing and Sequence Listing on Electronic carrier Storage of all incoming sequence listing files including versions (Legal version) Sequence Listing version comparison (Trimaran, etc.) Legal Publication server Date Stamp Verification Formatting "Scientific" Publication server Search Environment Business rules "Non redundant" Patent Sequence Database Process Relational Database Relational Database Verified Sequences Sequence Listings from National Patent Offices Text & Forms OCR Sequence Listing Verification process  Biological Sequences and Patents /Sequence Listing Value EPO

Sequence Listing Verification process Sequence Listing Creation Research Publication Processing

Data Publication: International Cooperation The Trilateral patent offices exchange and publish biological sequence data in collaboration with the Public Database Providers USPTO JPO KIPO EPO  Biological Sequences and Patents / Published sequences exchange

Non Redundant Patent Sequence Database / Project Overview  Biological Sequences and Patents / Non redundant Patent Sequence Database

Non Redundant Patent Sequence Database / Sequence Capture  Biological Sequences and Patents / Non redundant Patent Sequence Database Sequence Detection Algorithm: Detects the presense of sequences in all incoming EPO applications, using multipass scanning through different detection levels Data Management Pipelines: Enrichment of database coverage avoiding redundancy

 Biological Sequences and Patents / Non redundant Patent Sequence Database 2 types of NR databases Database record (L2) Search and Public EBI PN corrections Non Redundant Patent Sequence Database / Publicly available

Chemical compounds and Patents Biological Sequences and Patents Extraction of Chemical names in Patents

Parsing chemicals ► Chemical Structures ► IUPAC name ►Link to Patent numbers systematic names trivial names formulae acronyms fragments OSCAR Extraction of Chemical names in Patents  Biological Sequences and Patents / Extraction of chemical names from patents

Chemical Information from Patents  Biological Sequences and Patents / Availability of chemicals from patents

Availability of Patent related EBI  Biological and Chemical Information from Patents

Acknowledgements: FELICS is funded by the European Commission under FELICS, contract number (RII3) within the Research Infrastructure Action of the FP6 "Structuring the European Research Area" Programme. Additional funding has been provided by EMBL-EBI and the European Patent Office.