Env 1 st + 2 nd cdp3 rd cdp gag pol tax 1 st + 2 nd cdp3 rd cdp 1 st + 2 nd cdp3 rd cdp 1 st + 2 nd cdp3 rd cdp Fig. S1.

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env 1 st + 2 nd cdp3 rd cdp gag pol tax 1 st + 2 nd cdp3 rd cdp 1 st + 2 nd cdp3 rd cdp 1 st + 2 nd cdp3 rd cdp Fig. S1

HTLV-1(ATK) HTLV-1(Boi) HTLV-1(ATL-YS) HTLV-1(Mel5) STLV-5(MarB43) STLV-1(Tan90) STLV-1(TE4) HTLV-3(Pyl43) HTLV-3(2026ND) STLV-3(NG409) STLV-3(Ph969) STLV-3(CTO604) STLV-3(TGE2117) STLV-3(Ppaf3) STLV-2(Pan-p) HTLV-2b(G12) STLV-2(pp1664) HTLV-2a(Kay96) HTLV-4(1863LE) HTLV-2b(Gab) HTLV-2b(G2) HTLV-2a(MoT) HTLV-2d(Efe) HTLV-2a(SP-WV) NJ gag (1041-bp) 0.01 Fig. S2a

HTLV-1(ATK) HTLV-1(Boi) HTLV-1(ATL-YS) HTLV-1(Mel5) STLV-5(MarB43) STLV-1(Tan90) STLV-1(TE4) HTLV-3(Pyl43) HTLV-3(2026ND) STLV-3(NG409) STLV-3(Ph969) STLV-3(CTO604) STLV-3(TGE2117) STLV-3(Ppaf3) STLV-2(Pan-p) HTLV-2b(G12) STLV-2(pp1664) HTLV-2a(Kay96) HTLV-4(1863LE) HTLV-2b(Gab) HTLV-2b(G2) HTLV-2a(MoT) HTLV-2d(Efe) HTLV-2a(SP-WV) NJ pol (2418-bp) 0.05 Fig. S2b

HTLV-1(ATK) HTLV-1(Boi) HTLV-1(ATL-YS) HTLV-1(Mel5) STLV-5(MarB43) STLV-1(Tan90) STLV-1(TE4) HTLV-3(Pyl43) HTLV-3(2026ND) STLV-3(NG409) STLV-3(Ph969) STLV-3(CTO604) STLV-3(TGE2117) STLV-3(Ppaf3) STLV-2(Pan-p) HTLV-2b(G12) STLV-2(pp1664) HTLV-2a(Kay96) HTLV-4(1863LE) HTLV-2b(Gab) HTLV-2b(G2) HTLV-2a(MoT) HTLV-2d(Efe) HTLV-2a(SP-WV) NJ env (1299-bp) 0.02 Fig. S2c

HTLV-1(ATK) HTLV-1(Boi) HTLV-1(ATL-YS) HTLV-1(Mel5) STLV-5(MarB43) STLV-1(Tan90) STLV-1(TE4) HTLV-3(Pyl43) HTLV-3(2026ND) STLV-3(NG409) STLV-3(Ph969) STLV-3(CTO604) STLV-3(TGE2117) STLV-3(Ppaf3) STLV-2(Pan-p) HTLV-2b(G12) STLV-2(pp1664) HTLV-2a(Kay96) HTLV-4(1863LE) HTLV-2b(Gab) HTLV-2b(G2) HTLV-2a(MoT) HTLV-2d(Efe) HTLV-2a(SP-WV) NJ tax (960-bp) 0.01 Fig. S2d

HTLV-1(ATK) HTLV-1(Boi) HTLV-1(ATL-YS) HTLV-1(Mel5) STLV-5(MarB43) STLV-1(Tan90) STLV-1(TE4) HTLV-3(Pyl43) HTLV-3(2026ND) STLV-3(NG409) STLV-3(Ph969) STLV-3(CTO604) STLV-3(TGE2117) STLV-3(Ppaf3) STLV-2(Pan-p) HTLV-2b(G12) STLV-2(pp1664) HTLV-2a(Kay96) HTLV-4(1863LE) HTLV-2b(Gab) HTLV-2b(G2) HTLV-2a(MoT) HTLV-2d(Efe) HTLV-2a(SP-WV) NJ entire genome sans LTR (6934-bp) 0.05 Fig. S2e

HTLV-1(ATK) HTLV-1(Boi) HTLV-1(ATL-YS) HTLV-1(Mel5) STLV-5(MarB43) STLV-1(Tan90) STLV-1(TE4) HTLV-3(Pyl43) HTLV-3(2026ND) STLV-3(NG409) STLV-3(Ph969) STLV-3(CTO604) STLV-3(TGE2117) STLV-3(Ppaf3) STLV-2(Pan-p) HTLV-2b(G12) STLV-2(pp1664) HTLV-2a(Kay96) HTLV-4(1863LE) HTLV-2b(Gab) HTLV-2b(G2) HTLV-2a(MoT) HTLV-2d(Efe) HTLV-2a(SP-WV) ML gag (1041-bp) Fig. S2f

Fig. S2g HTLV-1(ATK) HTLV-1(Boi) HTLV-1(ATL-YS) HTLV-1(Mel5) STLV-5(MarB43) STLV-1(Tan90) STLV-1(TE4) HTLV-3(Pyl43) HTLV-3(2026ND) STLV-3(NG409) STLV-3(Ph969) STLV-3(CTO604) STLV-3(TGE2117) STLV-3(Ppaf3) STLV-2(Pan-p) HTLV-2b(G12) STLV-2(pp1664) HTLV-2a(Kay96) HTLV-4(1863LE) HTLV-2b(Gab) HTLV-2b(G2) HTLV-2a(MoT) HTLV-2d(Efe) HTLV-2a(SP-WV) ML pol (2418-bp)

Fig. S2h HTLV-1(ATK) HTLV-1(Boi) HTLV-1(ATL-YS) HTLV-1(Mel5) STLV-5(MarB43) STLV-1(Tan90) STLV-1(TE4) HTLV-3(Pyl43) HTLV-3(2026ND) STLV-3(NG409) STLV-3(Ph969) STLV-3(CTO604) STLV-3(TGE2117) STLV-3(Ppaf3) STLV-2(Pan-p) HTLV-2b(G12) STLV-2(pp1664) HTLV-2a(Kay96) HTLV-4(1863LE) HTLV-2b(Gab) HTLV-2b(G2) HTLV-2a(MoT) HTLV-2d(Efe) HTLV-2a(SP-WV) ML env (1299-bp)

HTLV-1(ATK) HTLV-1(Boi) HTLV-1(ATL-YS) HTLV-1(Mel5) STLV-5(MarB43) STLV-1(Tan90) STLV-1(TE4) HTLV-3(Pyl43) HTLV-3(2026ND) STLV-3(NG409) STLV-3(Ph969) STLV-3(CTO604) STLV-3(TGE2117) STLV-3(Ppaf3) STLV-2(Pan-p) HTLV-2b(G12) STLV-2(pp1664) HTLV-2a(Kay96) HTLV-4(1863LE) HTLV-2b(Gab) HTLV-2b(G2) HTLV-2a(MoT) HTLV-2d(Efe) HTLV-2a(SP-WV) ML tax (960-bp) Fig. S2i

Fig. S2j HTLV-1(ATK) HTLV-1(Boi) HTLV-1(ATL-YS) HTLV-1(Mel5) STLV-5(MarB43) STLV-1(Tan90) STLV-1(TE4) HTLV-3(Pyl43) HTLV-3(2026ND) STLV-3(NG409) STLV-3(Ph969) STLV-3(CTO604) STLV-3(TGE2117) STLV-3(Ppaf3) STLV-2(Pan-p) HTLV-2b(G12) STLV-2(pp1664) HTLV-2a(Kay96) HTLV-4(1863LE) HTLV-2b(Gab) HTLV-2b(G2) HTLV-2a(MoT) HTLV-2d(Efe) HTLV-2a(SP-WV) ML entire genome sans LTR (6934-bp)