Fig. S1. Modulation of chromatin structure of AS52 cells by increasing concentrations of resveratrol, probed by limited digestion with Dnase I: densitometric.

Slides:



Advertisements
Similar presentations
Kinetics of DNA Damage and Repair in Fish using the Zebrafish (Danio rerio) as a model Chris A. McCabe 1, Chris W. Theodorakis 2, Theodore B. Henry 1 and.
Advertisements

E2 GSCE2 bulkG7 GSCG7 bulk Mean SF4Gy (95% CI) 0.78 (0.72, 0.83) 0.56 (0.47, 0.64) 0.65 (0.57,0.72) 0.43 (0.34,0.51) T test of meansp = 0.001p =
UVA (kJ/m 2 ) UVB (J/m 2 ) UVC (J/m 2 ) Supplementary Figure S1 Gel loading control for carbonyl visualization Extracts.
Scheme 1 Cu(Sal-Gly)(phen) Cu(Sal-Gly)(pheamine) Cu(Sal-Gly)(phepoxy)
The DNA synthesome: its potential as a novel in vitro model system for studying S- phase specific anticancer agents  Waleed Abdel-Aziz, Linda H. Malkas,
From: The role of acetylation in rDNA transcription
Molecular Biology Working with DNA.
Volume 16, Issue 3, Pages e4 (March 2014)
Histone Acetylation Regulates Intracellular pH
Volume 32, Issue 1, Pages (October 2008)
Ellagic acid inhibits oxidized LDL-mediated LOX-1 expression, ROS generation, and inflammation in human endothelial cells  Wen-Jane Lee, PhD, Hsiu-Chung.
Volume 118, Issue 4, Pages (April 2000)
Seung-Hwan Kim, W. Matthew Michael  Molecular Cell 
Activation of ATF4 mediates unwanted Mcl-1 accumulation by proteasome inhibition by Jinsong Hu, Nana Dang, Eline Menu, Elke De Bryune, Dehui Xu, Ben Van.
Volume 41, Issue 5, Pages (March 2011)
Haley D.M. Wyatt, Shriparna Sarbajna, Joao Matos, Stephen C. West 
Nanomolar concentration of NSC606985, a camptothecin analog, induces leukemic-cell apoptosis through protein kinase Cδ–dependent mechanisms by Man-Gen.
Nucleosome Sliding via TBP DNA Binding In Vivo
Volume 22, Issue 4, Pages (December 2015)
Oxidative Damage to RPA Limits the Nucleotide Excision Repair Capacity of Human Cells  Melisa Guven, Reto Brem, Peter Macpherson, Matthew Peacock, Peter.
Volume 22, Issue 3, Pages (May 2006)
Volume 72, Issue 4, Pages (August 2007)
Volume 3, Issue 1, Pages (January 1999)
C.B. Marshall, J.W. Pippin, R.D. Krofft, S.J. Shankland 
Journal of Investigative Dermatology
Volume 90, Issue 1, Pages (July 1997)
Volume 28, Issue 1, Pages (October 2007)
Volume 30, Issue 3, Pages (May 2008)
Volume 9, Issue 2, Pages (February 2002)
Molecular Biology Working with DNA.
Davina A. Lewis, Simone F. Hengeltraub, Feng C. Gao, Megan A
V. I. Grishko, Ph. D. , R. Ho, Ph. D. , G. L. Wilson, Ph. D. , A. W
Noritaka Oyama, Keiji Iwatsuki, Yoshimi Homma, Fumio Kaneko 
Volume 9, Issue 2, Pages (October 2014)
Coimbatore S. Sreevidya, Atsushi Fukunaga, Noor M
Volume 66, Issue 4, Pages e5 (May 2017)
A Role for Ran-GTP and Crm1 in Blocking Re-Replication
Volume 42, Issue 2, Pages (February 2005)
Volume 51, Issue 4, Pages (August 2013)
Ramiro E. Verdun, Laure Crabbe, Candy Haggblom, Jan Karlseder 
Role and regulation of activation of caspases in cisplatin-induced injury to renal tubular epithelial cells  Gur P. Kaushal, Varsha Kaushal, Ph.D., Xiaoman.
Interaction of Human DNA Polymerase η with Monoubiquitinated PCNA
Human Keratinocytes Respond to Osmotic Stress by p38 Map Kinase Regulated Induction of HSP70 and HSP27  M. Garmyn, A. Pupe  Journal of Investigative Dermatology 
Hansen Du, Haruhiko Ishii, Michael J. Pazin, Ranjan Sen  Molecular Cell 
Resistance of Human Melanoma Cells Against the Death Ligand TRAIL Is Reversed by Ultraviolet-B Radiation via Downregulation of FLIP  Elke Zeise, Michael.
Volume 12, Issue 11, Pages (November 2005)
Volume 14, Issue 6, Pages (February 2016)
Volume 16, Issue 9, Pages (September 2009)
New Histone Incorporation Marks Sites of UV Repair in Human Cells
Histone–GFP fusion protein enables sensitive analysis of chromosome dynamics in living mammalian cells  Teru Kanda, Kevin F. Sullivan, Geoffrey M. Wahl 
Nucleosomes Unfold Completely at a Transcriptionally Active Promoter
Richard W. Deibler, Marc W. Kirschner  Molecular Cell 
Rapid and Selective Remodeling of a Positioned Nucleosome during the Induction of IL- 12 p40 Transcription  Amy S Weinmann, Scott E Plevy, Stephen T Smale 
Volume 47, Issue 4, Pages (August 2012)
Replication Inhibitors Modulate Instability of an Expanded Trinucleotide Repeat at the Myotonic Dystrophy Type 1 Disease Locus in Human Cells  Zhi Yang,
Histone H4 Lysine 91 Acetylation
Decreased Phospholipase D (PLD) Activity in Ceramide-Induced Apoptosis of Human Keratinocyte Cell Line HaCaT  Yoshihiko Iwasaki-Bessho, Yoshiko Banno,
Volume 14, Issue 10, Pages (October 2007)
Volume 17, Issue 6, Pages (November 2016)
Deregulated Replication Licensing Causes DNA Fragmentation Consistent with Head- to-Tail Fork Collision  Iain F. Davidson, Anatoliy Li, J. Julian Blow 
SWI/SNF Chromatin Remodeling Requires Changes in DNA Topology
An Early Developmental Transcription Factor Complex that Is More Stable on Nucleosome Core Particles Than on Free DNA  Lisa Ann Cirillo, Kenneth S Zaret 
Figure 1. CSB does not affect the recruitment of OGG1 to oxidative DNA damage. (A) Representative stills of time-lapse ... Figure 1. CSB does not affect.
Synthetic Chromatin Acylation by an Artificial Catalyst System
Ultraviolet-B-Induced G1 Arrest is Mediated by Downregulation of Cyclin-Dependent Kinase 4 in Transformed Keratinocytes Lacking Functional p53  Arianna.
DNA-binding and double-strand break formation by Vpr.
AppA Is a Blue Light Photoreceptor that Antirepresses Photosynthesis Gene Expression in Rhodobacter sphaeroides  Shinji Masuda, Carl E. Bauer  Cell  Volume.
Meiotic DNA Breaks at the S. pombe Recombination Hot Spot M26
Volume 3, Issue 1, Pages (January 1999)
Bradford Coffee, Fuping Zhang, Stephanie Ceman, Stephen T
Presentation transcript:

Fig. S1. Modulation of chromatin structure of AS52 cells by increasing concentrations of resveratrol, probed by limited digestion with Dnase I: densitometric analysis of electrophoresis gels shown in Fig. 1A. Nuclei were isolated from cells treated for 24 hours with indicated concentrations of resveratrol. DNA fragment size analyses were performed after the agarose gel electrophoresis by the Image J software. Fluorescence intensity profiles of the lanes corresponding to samples treated with the indicated amount of DNase I are shown on the right. Mode values are indicated by arrows and position of undigested DNA by the dashed line. Molecular size markers (M) are shown for reference. resveratrol (μM) DNase I (units) M resveratrol (μM) M 5000 bp 500 bp 1500 bp

Fig. S2. Modulation of chromatin structure of AS52 cells by the HDAC inhibitors butyrate (BA) and trichostatin A (TSA), probed by limited digestion with DNase I: densitometric analysis of electrophoresis gels shown in Fig. 1D. Nuclei were isolated from cells treated for 24 hours with indicated concentrations of the substances. DNA fragment size analyses were performed after the agarose gel electrophoresis by the Image J software. Fluorescence intensity profiles of the lanes corresponding to samples treated with the indicated amount of DNase I are shown on the right. Mode values are indicated by arrows and position of undigested DNA by the dashed line. Molecular size markers (M) are shown for reference. control BA (0.3 mM) BA (2 mM) TSA (30 nM) control BA (0.3 mM) BA (2 mM) TSA (30 nM) DNase I (units) 5000 bp 500 bp 1500 bp control BA (0.3 mM) BA (2 mM) TSA (30 nM) M M

resveratrol (μM) M DNase I (units) resveratrol (μM) M 5000 bp 500 bp 1500 bp resveratrol (μM) Fig. S3. Effect of increasing concentrations of resveratrol on the global chromatin structure of HeLa cells, probed by limited digestion with DNase I. Nuclei were isolated from cells treated for 24 hours with indicated concentrations of the substance. DNA fragment size analyses were performed after the agarose gel electrophoresis by the Image J software. Fluorescence intensity profiles of the lanes corresponding to samples treated with the indicated amounts of DNase I are shown on the right. Mode values are indicated by arrows and position of undigested DNA by the dashed line. Molecular size markers (M) are shown for reference.

Fig. S4. Effect of resveratrol (24-hour treatments) on the proliferation of HeLa cells. cell count (log 10 ) time (hours) resveratrol removed solvent 10 µM 30 µM 75 µM 1 µM 100 µM 5 μM

Fig. S5. Effect of resveratrol (75 µM, 24 hours) on the total glutathione levels in AS52 and HeLa cells. The numbers of independent determinations are indicated above the columns. Columns indicate means ± S.D. glutathione (nmol / 100 µg protein) (14) (7) (5) (4)

resveratrol (µM] T4EV sites (% unrepaired) resveratrol (µM] T4EV sites /10 6 bp not irradiated 2.9 J/m 2 UV-B repair time (hours) T4EV sites (% unrepaired) solvent 75 µM resveratrol * Fig. S6. Influence of resveratrol on the generation and repair of UV-B induced damage in HeLa cells. CPDs in chromosomal DNA were quantified by alkaline elution as T4 endonuclease V sensitive (T4EV) sites. (A) Effect of a pretreatment with resveratrol (24 h) on the generation of CPDs (n≥3). (B) Effect of resveratrol on the CPD repair kinetics (n≥3). (C) Concentration-dependent effect of resveratrol on the fraction of unrepaired CPDs measured 8 hours after UV-B exposures (n≥3). Data indicate means ± S.D. Student´s t-test: * p < ABC

resveratrol (µM) Fpg sites /10 6 bp no damage induction Ro light repair time (hours) Fpg sites (% unrepaired) solvent 75 µM resveratrol resveratrol (µM) Fpg sites (% unrepaired) Fig. S7. Influence of resveratrol on the generation and repair of DNA base modifications induced by photosensitization in HeLa cells. Oxidized purine species (predominantly 8-oxoG) in chromosomal DNA were quantified by alkaline elution as Fpg-sensitive sites. (A) Effect of a pretreatment with resveratrol (24 h) on the induction of the Fpg-sensitive base damage by irradiation with light in the presence of 100 nM Ro (n≥3). (B) Effect of resveratrol on the repair kinetics of the Fpg sensitive DNA lesions (n≥3). (C) Concentration-dependent effect of resveratrol on the fraction of unrepaired Fpg sensitive DNA lesions 3 hours after the damage generation (n≥3). Data indicate means ± S.D. ABC

Fig. S8. Influence of TSA on the repair of DNA single-strand breaks (SSB) induced in AS52 cells by H 2 O 2. Cells were pretreated 24 hours with 30 nM trichostatin A (TSA) and exposed to H 2 O 2 (150 µM) 15min at 37°C. DNA damage was quantified by alkaline elution. Data indicate means ± S.D repair time (min) solvent 30 nM TSA SSB (% unrepaired)

Fig. S9. Effect of resveratrol (75 µM) and sirtuine inhibitor EX-527 (10 µM) on the global chromatin structure of AS52 cells, probed by its accessibility to DNase I. Nuclei were isolated from cells treated for 24 hours with the indicated substances. DNA fragment size analyses were performed after the agarose gel electrophoresis by the Image J software. Fluorescence intensity profiles of the lanes corresponding to samples treated with the indicated amounts of DNase I are shown on the right. Mode values are indicated by arrows (two arrows in graphs with bimodal distribution) and position of undigested DNA by the dashed line. Molecular size markers (M) are shown for reference bp 500 bp 1500 bp Resveratrol EX DNase I (units) M M