Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical.

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Presentation transcript:

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Informatics Methods in Biomedicine: Foundations of a Profession

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Molecules Cells Tissues Organs PatientPopulation

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Clinical Basic Sciences Preclinical Post-doc

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Prerequisites Introductory computer science Programming languageProgramming language Data structuresData structures AlgorithmsAlgorithms

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Formal Competencies Systems -Systems architecture, system integration, software engineeringSystems - Systems architecture, system integration, software engineering Knowledge -Data mining, knowledge bases, rule bases, information retrievalKnowledge - Data mining, knowledge bases, rule bases, information retrieval Data - Ontology, databases, signal processing, image processing, sequence analysisData - Ontology, databases, signal processing, image processing, sequence analysis

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Prerequisites StatisticsStatistics Elementary experimental methodsElementary experimental methods

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Empirical Competencies Systems –User interfaces, project management, needs assessment, impact assessmentSystems – User interfaces, project management, needs assessment, impact assessment Knowledge –Knowledge acquisition, decision analysis, computer-aided instructionKnowledge – Knowledge acquisition, decision analysis, computer-aided instruction Data – Data modeling, visualization, data standards, utilization modeling, security, confidentialityData – Data modeling, visualization, data standards, utilization modeling, security, confidentiality

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Prerequisites Biomedical sciences Molecular biologyMolecular biology AnatomyAnatomy PhysiologyPhysiology Public healthPublic health

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Bioinformatics Application Domain Intro to GenomicsIntro to Genomics Computation GenomicsComputation Genomics Sequence AnalysisSequence Analysis Microarrays and Regulatory NetworksMicroarrays and Regulatory Networks Biological DatabaseBiological Database

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Imaging Application Domain Biomedical ImagingBiomedical Imaging Analysis and Quantification of Medical ImagesAnalysis and Quantification of Medical Images Wavelet ApplicationsWavelet Applications Computation Neural Modeling and NeuroengineeringComputation Neural Modeling and Neuroengineering

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Clinical Application Domain Economics of InformaticsEconomics of Informatics Project ManagementProject Management Interactive Health CommunicationsInteractive Health Communications Introduction to Databases and Data MiningIntroduction to Databases and Data Mining

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Public Health Application Domain Use of Large Scale national health care data setsUse of Large Scale national health care data sets Hospital Organization and ManagementHospital Organization and Management Health CommunicationsHealth Communications

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health

Basic Research Informatics Challenges Applications Bioinformatics Biochips, algorithms for DNA sequencing, patient specific drugs Linking genomic and patient data, security, ethics Genetic-based patient records and protocols Imaging 3-D modeling, visualization, data representation Ontology-based ref models of classification of concepts and visual info 3-D anatomy atlases, radiological diagnosis Clinical Coding, data structures, high performance computing Vocabularies, automated retrieval from repositories Distributed medical records, clinical trials, teledentistry Public Health Databases, searching, data analysis theories and algorithms Integration and validation of info, knowledge discovery Data mining, citizen-based services

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Lessons Learned in Training AcculturationAcculturation Depth or BreadthDepth or Breadth DDS/PhDDDS/PhD

Formal Empirical Applied Mathematical and technical methods and theories Cognitive, behavioral, and organizational techniques and theories ImagingBioInformaticsClinical Public Health Thanks to Dr. Stephen B. Johnson Dr. Ted Shortliffe