Optical Microscopy Widefield Microscopy - Brightfield, Darkfield, DIC, Phase Contrast, Fluorescence … Total Internal Reflection (TIR and TIRF) Microscopy.

Slides:



Advertisements
Similar presentations
Bio-optics & Microscopy (MEDS 6450) 11/16/2010 Presented by: Mathilde Bonnemasison Leia Shuhaibar Steve Pirnie Ronghua (Ronnie) Yang Neil MAA, Juskaitis.
Advertisements

Microscopy Do you want a footer?.
BME6260: Biomedical Imaging Optics and Spectroscopy Matthew Mancuso BEE 7600, Professor Dan Luo Department of Biomedical Engineering, Cornell University.
Microscopy Outline 1.Resolution and Simple Optical Microscope 2.Contrast enhancement: Dark field, Fluorescence (Chelsea & Peter), Phase Contrast, DIC 3.Newer.
Lecture 19 Principles of optical microscopy. Illumination conjugate planes are shown in red; an image of the lamp filament is in focus at these planes.
1. Resolution (R) : separation of close objects, light wavelength NA, numerical aperture 2. Contrast : distinction of objects from background “light field”
Microscopy Boot Camp /08/25 Nikitchenko Maxim Baktash Babadi.
Fluorophores bound to the specimen surface and those in the surrounding medium exist in an equilibrium state. When these molecules are excited and detected.
Comparison and Implications of Three Optical Microscopy Data Acquisition Modalities James Butler Ph.D. Nikon Instruments, Inc. Widefield Fluorescence Confocal.
Fluorescence microscopy – Principle and practical consideration Hiro Ohkura.
Short pulses in optical microscopy Ivan Scheblykin, Chemical Physics, LU Outline: Introduction to traditional optical microscopy based on single photon.
Super-Resolution Fluorescence Microscopy
STED: Nanoscale 3D Optical Imaging Digvijay Raorane & Arun Majumdar Department of Mechanical Engineering Department of Materials Science University of.
P. Moghe, 125:583 1 Microscopy Techniques for Biomaterials and Cell Based Interfaces Professor Prabhas V. Moghe October 26, :583 Fall 2006.
USE AND CARE OF THE MICROSCOPE LECTURE 1. MICROSCOPY u Light Microscopy: any microscope that uses visible light to observe specimens u Compound Light.
Summary 34 1.Cells follow rules of chemistry; 2.Water is the most abundant substance proteins constitutes most of a cell’s dry mass; 3.Four major classes.
Study of Protein Association by Fluorescence-based Methods Kristin Michalski UWM RET Intern In association with Professor Vali Raicu.
Fluorescence Microscopy Chelsea Aitken Peter Aspinall.
Light Microscopy Sarah Heintz. Compound Microscope The microscope uses a lens that is close to the object and uses light to focus on the real image of.
Content of the lecture Principles of confocal imaging. Different implementations/modes. Primer on multi-photon (MPH) and multi-harmonic (MHG) generation.
Student “#2” OPTICAL SCAN RELAY IN CONFOCAL LASER SCANNING MICROSCOPY.
Microscopy.
I - PALM Super-resolution Methods. Detecting A Single Fluorescent Molecule? Size: ~ 1nm Absorption Cross-section: ~ cm 2 Quantum Yield: ~1 Absorbance.
Zoology I Cytology, Embryology & Histology By Dr/ Alyaa Ragae Zoology Lecture Faculty of Oral and Dental Medicine Future University.
Department of Biomedical Engineering, Yale University, New Haven, CT Multiphoton Microscopy Michael J. Levene.
TIRF Total Internal Reflection Fluorescence Microscopy specialized fluorescence microscopy technique specifically images a very thin optical section (50-250nm)
Total Internal reflection Fluorescence Microscopy: Instrumentation and Applications in Cell biology.
Tools of the Laboratory: The Microscope
Naomi Kinjal Asaad Binoy
Cycling of Matter in Living Systems 1.3 Developments in Imaging Technology and Staining Techniques.
IPC Friedrich-Schiller-Universität Jena 1 Reduction of out of focus light  Excitation light excites fluorescence more or less within the whole sample.
Microscopy 1. UNITS OF MEASUREMENT 1 m = 1000 mm (millimeters) 1 m = 1000 mm (millimeters) 1000 mm = 1 µm (microns) 1000 mm = 1 µm (microns) Bacteria.
Agenda How to make the specimen visible – Definition of Contrast
By: Rob Page and Tara Trovarello
Using Nanotechnology in Medical Imaging and Diagnosis Alisha Shutler Introduction to Nanotechnology December 1, 2007.
BIO 224 Intro to Molecular and Cell Biology. Microscopes are tools frequently used in cell biology Type of microscope used depends on the specimen being.
Advanced Biology Visualizing Cells. The Human Eye  Resolution – The minimum distance two points can be apart and still be distinguished as two separate.
Immunological Images and the ImmPort Database and Analysis Portal Anna Maria Masci Department of Immunology Duke University Buffalo, 24 June 2014.
Digital two photon microscopy for multiple fast signals acquisition Laboratory of Advanced Biological Spectroscopy (L.A.B.S.) University of Milan - Bicocca.
Microscopes Compound Bright-Field Light Microscope
Sowmya Vasa, Umar Alqasemi, Aditya Bhargava. Objectives This paper aims in bringing out a novel light microscopy method called Focal Modulation Microscopy.
Miysaka Lab. Keisuke Yamada Alexandros Pertsinidis, Yunxiang Zhang & Steven Chu.
Advanced Fluorescence & Confocal Microscopy 08/2007 Lecture by Dr. Dirk Lang Dept. of Human Biology UCT Medical School Room Phone:
Light Microscopy By: Nicole Sullivan.
Developments in Imaging Technology and Staining Techniques Unit C: Section 1.3 Science 10.
Molecular Cell Biology Light Microscopy in Cell Biology Cooper Modified from a 2010 lecture by Richard McIntosh, University of Colorado.
Confocal Laser Scanning Microscopy: general considerations and techniques Simone Bossi.
Microscopy. Microscopy Techniques objective light source “transmitted”
Biophotonics and medical imaging
Imaging Technology and Staining Techniques CHAPTER 1.3.
Optics Focus Confocal theory.
Science 10 – Unit C BIOLOGY Chapter 1 – The Microscope.
Microscopy
Electron Microscope. How do they work Instead of using light they fire a beam of electrons (which have a wavelength less than 1nm compared to light which.
Designing a Microscopy Experiment Kurt Thorn, PhD Director, Image from Susanne Rafelski, Marshall lab.
Date of download: 5/28/2016 Copyright © 2016 SPIE. All rights reserved. The schematic of the setup: (a) the multiphoton laser path and (b) the laser path.
Dr R.Jayaprada CONFOCAL MICROSCOPY.
Imaging.
 Bright-field  Dark-field  Phase Contrast  Fluorescence.
Brightfield Contrasting Techniques Kurt Thorn NIC.
Date of download: 7/5/2016 Copyright © 2016 SPIE. All rights reserved. Spatial light modulator-two-photon microscope (SLM-2PM) scheme: (1) Ti:Sa laser.
Topic 1 Microscopes and Microscopy. Light Microscopes  How do they work?  Optical magnification  Images pass through a lens or a series of lenses 
Light Microscope Terms and Practices.
Chapter 2: Viewing the Microbial World
Starter: Microscopes Which image is from the light microsope? How do you know?
Visualizing Dendritic Cell Networks In vivo
Dual Mode Reflectance and Fluorescence Confocal Laser Scanning Microscopy for In Vivo Imaging Melanoma Progression in Murine Skin  Yanyun Li, Salvador.
LIGHT MICROSCOPY variations
FLUORESCENCE MICROSCOPY
Volume 87, Issue 5, Pages (November 2004)
Presentation transcript:

Optical Microscopy Widefield Microscopy - Brightfield, Darkfield, DIC, Phase Contrast, Fluorescence … Total Internal Reflection (TIR and TIRF) Microscopy Confocal Microscopy - fluorescence and reflection. Multiphoton or Nonlinear Microscopy Nearfield Microscopy (NSOM) 4-Pi Microscopy STED Microscopy (STimulated Emission Depletion) Structured illumination microscopy (SIM) and saturated structured illumination microscopy (SSIM) Selective plane illumination microscopy

Optical Sectioning in Biological Microscopy Fluorescently labeled sea urchin eggs Conventional light microscopy doesn’t work well on thick (> few microns) specimens Fixation and Physical Sectioning Widefield Fluorescence Deconvolution Methods (Computational) Widefield Fluorescence Live specimens Confocal Microscopy Confocal Aperture Multiphoton Microscopy nonlinear processes

Laser scanning microscopy The focused laser is raster scanned across the sample and the fluorescence is detected, amplified and digitized. Objective lens

Confocal Microscopy produces optical sections by excluding light from outside of the focal plane. Fluorescence excitation emission

Two-Photon, Multiphoton or Nonlinear Microscopy uses nonlinear optical processes to create contrast and obtain optical sectioning. The two most common nonlinear processes are Two photon fluorescence and second harmonic generation (SHG):

In vivo imaging - example: transgenic mouse models of Alzheimer's disease. 3D projection of b amyloid plaque stained with Thio-S, excitation at 760 nm. Christie, R. H., Bacskai, B. J., Zipfel, W. R., Williams, R. M., Kajdasz, S. T., Webb, W. W. & Hyman, B. T. (2001) J Neurosci 21, 858-64. Bacskai, B. J., Kajdasz, S. T., Christie, R. H., Carter, C., Games, D., Seubert, P., Schenk, D. & Hyman, B. T. (2001) Nat Med 7, 369-72.

With Alexander Niktitin’s laboratory, Biomedical Sciences Transgenic mouse models of ovarian cancer based on p53 and Rb inactivation Histology MPM Intrabursal injections of AdCre into mice carrying conditional p53, Rb1 or both alleles results in ~100% epithelial neoplasms With Alexander Niktitin’s laboratory, Biomedical Sciences

1. A more complex instrument. Is it possible to use nonlinear laser scanning microscopy to image a ~cm field of view* as an aid, for example, to better define tumor borders? Advantages may be: 1. Better 3D view. 2. Maximum optical resolution could still be on the order of ~4 microns and the system would be able to zoom to the cellular level. 3. Ability to excite both targeted contrast agents (example – 5-ALA -> protoporphyrin IX) and use intrinsic signals for an overall tissue view. Disadvantages: 1. A more complex instrument. 2. Since it would be used with a conventional surgical microscope, image registration may be difficult to achieve. *Typical field of view in a laser scanning (confocal or multiphoton) microscope is ~0.5 x 0.5 mm

Intraoperative Fluorescence microscope from Zeiss – OMPI Pentero Glioblastoma IV under white light and under BLUE 400 illumination Walter Stummer, M.D., University of Düsseldorf, Düsseldorf, Germany

Multiphoton imaging with a 2x lens (0.14 NA) - field of view is 7 mm (movie is of the word “Cornell” in 12 pt font from my business card)

Ascites tumor model (transformed p53/Rb ovarian epithelial cells injected IP) Widefield fluorescence image (cells also express GFP) tumor White light image of small (~3 mm diameter) metastasis on small instestine

Two color multiphoton imaging of tumor on the small intestine in an ascites tumor model 7 mm