CASIROZ - 2 nd meeting: Ectomycorrhizal studies in WP1 & WP2 Tine GREBENC, Peter ZELEZNIK & Hojka KRAIGHER Slovenian Forestry Institute, Ljubljana, Slovenia.

Slides:



Advertisements
Similar presentations
EU INTAS SILVICS Project Pushchino Research Centre of the Russian Academy of Sciences Institute of Mathematical Problems in Biology (Pushchino.
Advertisements

Long-term implications of plant invasions: the significance of the soil seed bank School of Biology and Environmental Science.
Physical Evidence used to Establish Reference Conditions for the Southwest Jemez CFLR Project In order to set goals that underlie restoration treatments,
Succession of a Riparian Forest Andrea M. Shea Supervisor: Kermit the Frog Department of Biological Sciences California State University, Sacramento ABSTRACT.
FIELD METHODS Strategy for Monitoring Post-fire Rehabilitation Treatments Troy Wirth and David Pyke USGS – Biological Resources Division Forest and Rangeland.
15 The Nature of Communities. 15 The Nature of Communities Case Study: “Killer Algae!” What Are Communities? Community Structure Interactions of Multiple.
Ectomycorrhizal dynamics of white fir stands at Teakettle A.D. Izzo and T.D. Bruns Plant and Microbial Biology University of California, Berkeley.
Thesis  Erin Harrington  Advisors  Bobbi Low  Phil Myers.
o What were we looking at? o The Pit Crew studied soil patterns throughout the landscape.
Lecture 15 MYCORRHIZAS
Forest simulation models in Finland: main developments and challenges WG1 Jari Hynynen, Annikki Mäkelä & Kalle Eerikäinen COST ACTION FP0603: Forest models.
Effects of mercury on ectomycorrhizal fungi Sharron Crane 1,2, John Dighton 1,3 and Tamar Barkay 1,2 1 Graduate Program in Ecology and Evolution, 2 Department.
Quantitative Genetics
Scientific FieldsScientific Fields  Different fields of science have contributed evidence for the theory of evolution  Anatomy  Embryology  Biochemistry.
Community Ordination and Gamma Diversity Techniques James A. Danoff-Burg Dept. Ecol., Evol., & Envir. Biol. Columbia University.
Geographic Variation in the Allelopathic Potential of American Beech (Fagus grandifolia) Emily A. Neidhardt Faculty Mentor: Dr. David B. Vandermast Elon.
Lecture 4 Dustin Lueker.  The population distribution for a continuous variable is usually represented by a smooth curve ◦ Like a histogram that gets.
Ph. Wipfler and G.Deckmyn Kranzberg Forest Experiment : upscaling to the forest. From the empirical approach to the mechanistic simulation of ozone effects.
Statistical averaging
Richard White Biodiversity Data. Outline Biodiversity: what is it? – Definitions: is biodiversity: A resource? Something which can be measured? How to.
Successional processes Hypothesis: Climate influences the rate and trajectory of succession by altering disturbance regime and the abundance of key species.
CASIROZ - 1 st meeting: Ectomycorrhizal studies in WP1 & WP2 Hojka KRAIGHER Slovenian Forestry Institute, Ljubljana, Slovenia.
Fig. 6. Carbon isotopes of different genera of saprotrophic fungi (±SE) in elevated CO 2 (y-axis) and ambient (x- axis) treatments. Values for the putative.
California Science Content Standards Today's lecture and activity will cover the following content standards: 5d) Students know different kinds of organisms.
Introduction Nitrogen is one of the most essential nutrients for plant growth and development. However, plants are unable to use nitrogen in its natural.
Species Abundance and Diversity
Non-pollutant ecosystem stress impacts on defining a critical load Or why long-term critical loads estimates are likely too high Steven McNulty USDA Forest.
Pour mieux affirmer ses missions, le Cemagref devient Irstea Thomas Bourdier, Thomas Cordonnier, Georges Kunstler & Benoit Courbaud 9th IUFRO.
Measuring Diversity.
Predictors of tree growth in damar agroforests Grégoire Vincent * and Hubert de Foresta Introduction Damar agroforest (Lampung, Sumatra) are multi-species,
1 Species Abundance and Diversity. 2 Introduction Community: Association of interacting species inhabiting some defined area.  Community Structure includes.
Mycorrhizae Abundance and Diversity along a Hybridization Gradient in Pinyon Pine Trees Jason Browne NASA Space Grant Intern Northern Arizona University.
PARTNER 3: UA Research Group of Plant & Vegetation Ecology Prof. Dr. Reinhart Ceulemans Dr. Gaby Deckmyn Vincent Budts.
Climate change II: impacts Bio 415/615. Questions 1. What are 2 ways plants and animals have been influenced by climate change over the last 50 years?
Ozone Depletion vs. Greenhouse Effect. The Ozone Layer Ultraviolet radiation is a part of the solar radiation spectrum. It causes sun-burn and is deadly.
SIMULATION OF GROUND VEGETATION DIVERSITY IN BOREAL FORESTS Larisa Khanina 1, Maxim Bobrovsky 2, Alexander Komarov 2, Alex Mikhajlov 2 1 Institute of Mathematical.
Regeneration of Natural Pasture in Enclosures for Parthenium Weed Management in the Rangeland of Jigjiga, Somali Regional State, Ethiopia B Y Lisanework.
2013 2nd Quizzes Provide three traits that are characteristic of the fungi What are the three major groups of fungi we discussed in class Please differentiate.
Effect of retained trees on growth and structure of young Scots pine stands Juha Ruuska, Sauli Valkonen and Jouni Siipilehto Finnish Forest Research Institute,
Lecture 10 FORE 3218 Forest Mensuration II Lectures 10 Site Productivity Avery and Burkhart, Chapter 15.
Mycorrhiza, cytokinins and abscisic acid in the response of beech to 2xO 3 Tine Grebenc, Joanna Winwood, Adrienne Pate, Andrew O’Brien, David Hanke & Hojka.
Introduction to Biology Estimated 5-30 million species Only 2 million have been identified Only a few thousand have been studied Believed that life arose.
Congruence between species richness and human population density: reconciliation or conflict? Ole R VETAAS Unifob – Global, University of Bergen, 5015.
Nan Hui, Rauni Strömmer, Teija Koivula, Martin Romantschuk,
1 Trends in soil solution chemistry in temperate forests under on-going recovery from acidification and climate change in Flanders, Belgium Arne Verstraeten.
Kranzberg Forest Experiment: Differences in gas exchange and antioxidative compounds between young and adult beech trees at the branch and tree level exposed.
Spatiotemporal diversity and activity patterns of laccase genes in a forest soil H. Kellner, P. Luis, B. Zimdars and F. Buscot - Terrestrial Ecology, Institute.
Examining the role of competition in ectomycorrhizal interactions Peter Kennedy NPER post-doctoral fellow - UC Berkeley
Stand Development. Site Capability The ability of a forest to grow is related directly to physical site factors. Favourable physical factors create better.
Changing competitors and dynamics in a desert rodent community Glenda M. Yenni, Department of Biology, Utah State University Abstract: Recently, attempts.
Module 4 – Biodiversity By Ms Cullen. Terminology Try and define the following terms used when studying the environment.
EUFORINNO (RegPot No ) MULTIPLE SYMBIOSES ON ALDER (ALNUS SPP.) Tine Grebenc, Melita Hrenko, Hojka Kraigher.
Ectomycorrhizas of Cercocarpus ledifolius (rosaceae) Kelly R. McDonald, Jason Pennell, Jonathan L. Frank,and Darlene Southworth 學生 : 生科三甲 葉茱玫.
 The boreal forest or taiga exists as a nearly continuous belt of coniferous trees across North America and Eurasia.  Taiga is the Russian name for.
Disturbance and Succession
(Part 3) Climate change, forests and fire in the Sierra Nevada, California: implications for current and future resource management Hugh Safford Regional.
ARIMNet2 Young Researchers Seminar
Jean-Michel Carnus, Hervé Jactel, Floor Vodde
Biodiversity Variety of life
Biodiversity Variety of life
Soils, Climate Change and Vegetation Modeling
Biology Department, Colby College, 2014
Land Management, Mycorrhizal Diversity, and Soil Carbon Sequestration
12/09/2018 From production to application of arbuscular mycorrhizal fungi in agricultural systems: a multidisciplinary approach Jacqueline Baar.
Blood T-cell receptor diversity decreases during the course of HIV infection, but the potential for a diverse repertoire persists by Paul D. Baum, Jennifer.
Chapter 5 – Evolution of Biodiversity
Zooniverse Safari on the Serengeti! Observing and identifying species.
Surveys, Archival, & Observations
Evolution of Biodiversity
Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.
Presentation transcript:

CASIROZ - 2 nd meeting: Ectomycorrhizal studies in WP1 & WP2 Tine GREBENC, Peter ZELEZNIK & Hojka KRAIGHER Slovenian Forestry Institute, Ljubljana, Slovenia

Contribution to CASIROZ & interfaces with other participants & studies n New ECM characterisations & molecular databases n Diversity of ECM & differences among plots & containers / ozone impacts & sensitivities of whole mycorrhizal trees & seedllings n A contribution to studies of above & below-ground interactions / hormonal relationships, roots & ECM in young beech trees n A contribution to simulations of responses of the entire stand to ozone impact

Identification of types of ectomycorrhizae: n Anatomical characteristics (AGERER ), n Molecular methods (PCR-ITS-RFLP & sequencing) (GARDES & BRUNS 1993, as descr. in KRAIGHER & al. 1995; sequencing.: MARTĺN 2000) ©T.Bruns

Contains ca 400 RFLPs from fruitbodies and ectomycorrhizae (on Norway spruce, European beech, silver fir, austrian pine & alder) from the same FRP. some types will remain un-identified until GenBank is better filled in with sequencies, more difficult - also the physiology of most identified types is largely unknown: The PCR-ITS-RFLP library: Right: Taxotron ® DENDROGRAM from three RFLP patterns

CASIROZ - Ectomycorrhizal studies WP1: ECOPHYSIOLOGY & MODELING Y1 - 3: Mapping of fruitbodies & ECM on the whole plot Identification & characterisation of types of ECM Collection of herbarium material Regular analyses, preparation of discussions & reports, presentations & inputs to WP2 & for other partners Y1: Pilot study of roots & ECM of beech seedlings in containers Y2: ECM identification & quantification on the beech O 3 & C plot Y3: ECM identification & quantification on the beech O 3 & C plot Study of roots & ECM of beech seedlings in containers

CASIROZ - Ectomycorrhizal studies WP2: BIOCHEMISTRY & MOLECULAR BIOLOGY Y1 - 3: Preparation of PCR-ITS-RFLP database from fungal exicates & ECM from the whole plot Regular analyses, preparation of discussions & reports, presentations & inputs to WP1 & for other partners Y1: Build-up of the molecular databases (RFLP & sequencies) Y2: Molecular identifications of ECM Preparation of quantitative PCR for selected sp. / spp. (optional) Y3: Study of ECM of beech seedlings in containers

Methods: Trees in stand sporocarp sampling on and around the plot anatomical-morphological analysis of ECM in soil cores (V=274 ml) - complete results for 3/5 samplings molecular identification/confirmation of identification and build-up of PCR-RFLP database for ECM on beech

Methods: young beech trees in containers WinRhizo analysis of whole root system anatomical-morphological analysis of ECM on whole root system molecular identification / confirmation of identification (PCR-RFLP) 1x ozone, shaded 2x ozone, sun

Results: Anatomical-morphological analysis of ECM in soil cores in about 1/2 of soil samples beech and spruce roots were intermixed 21 different morphotypes were found and identified at least to the genus level (seven of them on spruce) Cenococcum geophilum, Russula fellea and R. cyanoxantha were found in most samples Lactarius pallidus, L. acris, Lactarius sp. and Russula sp.3 (on spruce) were recorded only in one soil sample Cenococcum geophilum Fr. Cortinarius sp. Cortinarius sp. 2 Genea hispidula Berk. et Br. Laccaria amethystina Cooke Lactarius acris (Bolton) Gray Lactarius blennius/vellereus Lactarius pallidus Pers. ex Fr. Lactarius sp. (spruce) Lactarius sp.2 (spruce) Lactarius sp.3 Russula cyanoxantha (Schaeff.) Fr. Russula fellea (Fr.:Fr.) Fr. Russula illota Romagn. Russula ochroleuca (Pers.) Fr. Russula sp.(cf. densifolia Secr.ex. Gillat) (spruce) Russula sp.2 (Emeticineae) (spruce) Russula sp.3 (spruce) Tuber cf. puberulum Berk&Broome (beech and spruce) Xerocomus chrysenteron (Bull.) Quel. unknown type (spruce)

Results: Sporocarp sampling on and around the plot No sporocarps of ECM species were collected on or around the plot in all five samplings during the year 2003 due to the extreme weather conditions. For molecular analysis sporocarps collected on the plot in years (by S. Reidl) were used.

Results: Molecular identification and build-up of PCR-RFLP database for ECM on beech 50 sporocarps from Herbarium in Munich, collected from research plot area were included in PCR-ITS-RFLP database 103 samples of ECM root tips from 3 samplings are to be included and analysed

Results: young beech trees in containers 8 seedlings were analysed by WinRhizo: Not all seedlings were analysed so far! WinRhizo - analysed root (partial) Whole root system (tree c09p54)

Results: Analysis of ECM on whole root systems high percentage of non-mycorrhizal roots low percentage of vital ECM root tips usually one type dominates the root system of a single seedling since not all seedlings have been completely analysed no correlation to the ozone treatment could be estimated so far.

Biodiversity indices (Atlas & Bartha 1981): n Species diversity: d = (S-1)/logN; S=# species, N=# individuals n Shannon-Weaver index: H= C/N(NlogN-  logn i ); C=2.3, N=# individuals, n i =# individuals in i-th sp. n Evenness: relative abundance of individuals in each sp. e=H/logS; n Equitability: J=H/H max ; H max = theoretical max. H index for a population, assuming that each sp. has only 1 member n & other.

Biodiversity & bioindication of stress (ecosystem level) n Pollution and other anthropogenic stresses diminish biodiversity indices (biodiversity indices also indicate natural successions). n Theoretically the stressed populations with lower diversity are less adaptable to future changes in the environment. n Therefore some indication about impacts of the fumigation on the ecosystem level (soil ecosystem) are expected.

Discussion and problems drought in the year 2003 could mask the effect of ozone treatment on mycorrhizal level there might be a significant human influence (tresspassing on the plot for several years) on the occurence and species composition of ECM seedlings in containers: which other stresses could influence ECM development (drought, competition, availability of inoculum, time-scale- dependance for development of different ECM…)

Continuation According to the plan (more sporocarp sampling would be beneficial, if fruitbodies do appear in 2004) Organization of the database Publication of the molecular database and ECM descriptions