HPCC Mid-Morning Break Module System

What are Modules? “The Environment Modules package provides for the dynamic modification of a user's environment via modulefiles. “ The main use at the HPCC is for loading different application environments.

HPCC Supported Modules Default supported modules are presented. “module avail” /opt/hpc/Modules/versions rc /opt/hpc/Modules/3.2.6/modulefiles dot module-cvs module-info modules null use.cus use.old use.own /opt/hpc/Modules/modulefiles HEEDS/5.3 fluent/ ls-dyna/971 mono pgi/6.2 totalview/8.7.0 R/2.7.0 gnu matlab/2006b mvapich/intel/1.1.0 pgi/7.0 totalview_old/8.0.2 R/Rmpi hp-mpi matlab/2009a openmpi/intel/1.2.8 ps/2.2.1 totalview_old/8.7.0 abaqus hpcc-common mcc-runtime openmpi/intel/1.3.3 ps/2.3 unicluster abaqus_parallel hpccgateway mkl/ pathscale/2.2.1 ps/2.4 valgrind/3.4.1 amber/10.0 i386/intelcc/09.0 mkl/ pathscale/2.3 ps/2.5 valkyrie/1.4.0 blast intelcc/09.0 mkl/ pathscale/2.4 ps/3.1 vtune/9.1 check-dev intelcc/ mkl/ pathscale/2.5 starp/2.8.0 vtune/rdc/9.1 cvs intelcc/ moab/5.2.4 pathscale/3.1 subversion emboss ls-dyna/970 moab/5.3.4 pdsh totalview/8.0.2

CUS - Center Un-supported Software To use unsupported software: “module load use.cus” “module avail” /opt/cus/modulefiles R/gcc/2.9.2 cuda/2.2 g95/g imagemagick nvidia/cuda-2.0 siesta/ R/intel/2.9.2 cuda/testing/2.3 gdal impi/3.1 openmm/Preview3 valgrind/3.2.0 R/pathscale/2.3.1 dock/6.2 git/ java/jre-1.6.0_13 pascal/fpc boost/01.39 dock/6.2-mpi gromacs/cuda/3.0.5 java/jre-1.6.0_14 powertools cmake fftw32 gromacs/std/3.0.5 ncarg python

Private Modules Create ~/privatemodules “module load use.own” “module avail”

Module Manipulation For example:  “module list”  “module unload intelcc mkl”  “module load gnu” Alternatively  module switch intelcc gnu Specific versions  module load intelcc/

More Module Manipulation Module Commands  module avail intelcc  module show intelcc/ Automatic Module loading  module commands in.bashrc  ${HOME}/.modulerc

Module Example #%Module###################################################################### ## ## R modulefile ## proc ModulesHelp { } { puts stderr "Use R." } set r_path /opt/hpc/R set ver module load check-dev if { [uname machine] == "x86_64" } { prepend-path PATH /opt/hpc/R/2.7.0/bin prepend-path LD_LIBRARY_PATH $r_path/$ver/lib64/R/lib prepend-path LIBRARY_PATH $r_path/$ver/lib64/R/lib set-alias R "R" }

Resources GNU Modules website: HPCC Documentation: ocs/module ocs/module “man module” and “man modulefile”

Questions?