Grids and Biology: A Natural and Happy Pairing Rick Stevens Director, Mathematics and Computer Science Division Argonne National Laboratory Professor,

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Presentation transcript:

Grids and Biology: A Natural and Happy Pairing Rick Stevens Director, Mathematics and Computer Science Division Argonne National Laboratory Professor, Department of Computer Science Director, Computation Institute The University of Chicago

TeraGrid [40 Gbit/s] DWDM Wide Area Network NCSA/UIUC ANL UIC Multiple Carrier Hubs Starlight / NW Univ Ill Inst of Tech Univ of Chicago Indianapolis (Abilene NOC) I-WIRE StarLight International Optical Peering Point (see Los Angeles San Diego DTF Backbone Abilene Chicago Indianapolis Urbana OC-48 (2.5 Gb/s, Abilene) Multiple 10 GbE (Qwest) Multiple 10 GbE (I-WIRE Dark Fiber) Solid lines in place and/or available by October 2001 Dashed I-WIRE lines planned for summer 2002

230 TB FCS SAN 500 TB FCS SAN 256 2p Madison 667 2p Madison Myrinet 128 2p Madison 256 2p Madison Myrinet ANL NCSA Caltech SDSCPSC 100 TB DataWulf TeraGrid in a Nutshell 32 Pentium4 52 2p Madison 20 2p Madison Myrinet 1.1 TF Power4 Federation CHILA 20 TB 96 GeForce4 Graphics Pipes 96 Pentium4 64 2p Madison Myrinet 4p Vis75 TB Storage 750 4p Alpha EV68 Quadrics 128p EV7 Marvel 16 2p (ER) Madison Quadrics 4 Lambdas ANL

OptIPuter Hosting on TeraGrid One way to think of TeraGrid is a hosting environment to support virtual OptIPuters OptIPuter can be viewed as an overlay on TeraGrid resources combining a collection of compute, data and visualization resources via optical networking.

Super Networks Enable New Applications Database blasting Gimme the whole thing and Ill sort it out at my end On-Demand caching for collaborative analysis Spontaneous large-scale tuple spaces.. minning rabbit trails Streaming tiled-displays (>100 Megapixel displays) Super Access Grid.. Lets watch all the digital streams in parallel Deep images Multiresolution, navigable images, movies, gimme all the versions in all the formats

Super Network Applications Trickle charging shared petabyte databases Always up-to-date repositories (mirrors, etc.) Persistent objects and cooperative computation that extend persistent objects Gimme all versions of that object that ever existed (dump the cvs repo) Spontaneous peer-to-peer infrastructure Match the structure of infrastructure to the structure of social networks

Super Networks Require New Architectures Super high-bandwidth systems have high concurrency Tbps 100x10 Gpbs, 25x40 Gbps etc. Large bandwidth delay products Non-intuitive chunking, based on compute/bdp Large-granularity in transactions (see previous page) Stream processing architectures Flow oriented services become increasingly important

Super Network Architecture Implications Speculation Super Networks create a computing and storage commons Increased used of speculation becomes possible Resource (commons) management Personal infrastructure complexity will become a major SW problem Extensions of OS concepts needed