Beispielbild SYNTHESYS II: Updating the BioCASe Technology Suite Jörg Holetschek Botanic Garden & Botanical Museum Berlin-Dahlem Dept. of Biodiversity.

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Beispielbild SYNTHESYS II: Updating the BioCASe Technology Suite Jörg Holetschek Botanic Garden & Botanical Museum Berlin-Dahlem Dept. of Biodiversity Informatics and Laboratories Königin-Luise-Straße Berlin TDWG Annual Meeting 2011 October 16 th – 21 st, New Orleans

2SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans The BioCASe Technology Suite Bio logical C ollection A ccess Se rvice Set of Standards and Software Packages for publishing primary biodiversity data of natural history collection & observation databases Developed and maintained by EU-funded projects: BioCASE Project (Biological Access Service for Europe) SYNTHESYS (Synthesis of Systematic Resources) SYNTHESYS II

3SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans ABCD and BioCASe Protocol

4SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans BioCASe Provider Software Publishes occurrence data as a BioCASe web service Compatible with several protocols (BioCASe, DiGIR) and data schemas (ABCD, DarwinCore, ABCD-EFG, ABCD-DNA) Works with SQL-compliant databases Currently ~95 installations serving ~1,500 collections with ~33.5m records to GBIF and BioCASe Platform independent

5SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans BioCASe Data Portals

6SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans Updating BioCASe: DNA/EFG Extensions EFG: Extension for Geosciences (Paleontology, Mineralogy) Network with currently 7 data providers ABCD-DNA Extension, Network with currently 5 members

7SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans Updating BioCASe: AVH/HISPID

8SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans Traditional BioCASe Web Service Web Service

9SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans New GBIF Indexing Approach: DwC Archives

10SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans From ABCD to DarwinCore Archives BioCASE ABCD Web Service 1. Dumping: BioCASe Provider Software 2. Transforming: Pentaho Data Integration ABCD Archive DarwinCore Archive(s) Networks  BioCASe Provider Software 3

11SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans From ABCD to DarwinCore Archives

12SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans Outlook BioCASe Data portals rely on the availability of a web service for single record retrieval  need to be made DwC-Archive ready ABCD -version 3 (assuming funding…) -Ontology?

13SYNTHESYS II: Updating the BioCASe Technology Suite, TDWG Annual Meeting 2011 New Orleans Jörg Holetschek Botanischer Garten & Botanisches Museum Abteilung Biodiversitätsinformatik & Labors Königin-Luise-Straße Berlin-Dahlem Tel wiki.bgbm.org/bps search.biocase.org