PRAGMA 15 (10/24/2008) Resources Group Pacific Rim Application and Grid Middleware Assembly Resources.

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Presentation transcript:

PRAGMA 15 (10/24/2008) Resources Group Pacific Rim Application and Grid Middleware Assembly Resources Group Work Since PRAGMA 14

PRAGMA 15 (10/24/2008) PRAGMA Grid 27 institutions in 17 countries/regions, 24 compute sites (+ 14 in preparation) UZH Switzerland NECTEC ThaiGrid Thailand UoHyd India MIMOS USM Malaysia CUHK HongKong ASGC NCHC Taiwan HCMUT HUT IOIT-HCM Vietnam AIST OsakaU UTsukuba TITech Japan BII IHPC NGO NTU Singapore MU Australia APAC QUT Australia KISTI Korea JLU China SDSC USA CICESE Mexico UNAM Mexico UChile Chile UUtah USA NCSA USA BU USA CeNAT-ITCR Costa Rica BESTGrid New Zealand CNIC GUCAS China LZU China UPRM Puerto Rico UZH Switzerland LZU China ASTI Philippines SKU UI Indonesia

PRAGMA 15 (10/24/2008) PRAGMA Grid Members and Team Sites –19 sites from PRAGMA member institutions –7 sites from Non-PRAGMA member institutions –23 sites contributed compute clusters Team members –222 and growing –one management contact / site –1~3 technical support contact / site –1~4 application drivers / application –1~5/Middleware development teams

PRAGMA 15 (10/24/2008) PRAGMA Grid Compute Resources

PRAGMA 15 (10/24/2008) Applications applications: (8 by PRIME) –Structure biology Phaser/Nimrod (MU, Australia) –Drug analysis EMSAM (PRIME) –Bio-medical research Cardiac output (PRIME) Cardial mechanics (PRIME) Ventricular Myocyte model (PRIME) –Genomics and meta-genomics Avian Flu Grid/CSF (SDSC/CNIC/JLU/UTsukuba/…) –Computational fluid dynamics e-AIRS (KISTI, Korea) –Environmental Science CSTFT/Ninf-G (UPRM, Puerto Rico) –Organic-chemistry Enediynes (PRIME) Virtual screen SHP-1 and SHP-2 (PRIME) Virtual screen SSH-2 (PRIME) –Computer Science Image Analysis (UMelb, Australia) –Nanotechnology Nanoengineering simulation (PRIME)

PRAGMA 15 (10/24/2008) Phaser/Nimrod-G – structural biology –Australian enterpriseGrid –APAC Grid –OSG FermilabGrid RENCI (VO) Submitted a paper to an IEEE conference Grid Interoperation Experiments

PRAGMA 15 (10/24/2008) SCMSWeb-Condor Interface SCMSWeb interface Condor-G SCMSWeb provides system info, Condor-g dispatchs jobs accordingly Collaboration between PRAGMA and Condor –ThaiGrid Project lead Interface development work –SDSC Coordination Resource support –KISTI Application testing –Condor Interface development support Current Status –Running on rocks-153.sdsc.edu –Successfully tested with application –Working on improving performance and fault-tolerance Submitted a paper to an IEEE conference

PRAGMA 15 (10/24/2008) SCMSWeb New Features Automatic alert deployed and operational –According to probe failure status –3 times a week – to site admins and Cindy Zheng Bi-directional bandwidth measurements using iPerf –Deployed on 11 systems –Need to investigate problems with some sites in one direction –Need to deploy to all systems Software catalog –Implemented for 7 software so far Amber, APBS, AutoDock, NAMD Ninf-G Intel-C, Intel-Fortran –Deployed on 11 systems –Need to deploy to all systems –Add more software as needed

PRAGMA 15 (10/24/2008) PRAGMA-CA and VOMS PRAGMA-UCSD CA ( –Lead by Yoshio Tanaka, Mason Katz and Cindy Zheng –Built according to the most current APGrid recommendations and guidelines –Naregi-CA developed new version –Setup at SDSC –Accredited by APGrid PMA in April, 2008 –Included in IGTF distribution in July, 2008 –Issued 10 host certs for PRAGMA grid services at SDSC Compute clusters GOC server VOMS server Condor server Portals VOMS ( –Lead by Vladimir Mencl (BeSTGrid) and Cindy Zheng –Setup VOMRS server at SDSC –Focused on group mapping to local account –Successfully tested with BeSTGrid as a client system –Documented for users and site administrators –Issues need to be discussed before wider deployment

PRAGMA 15 (10/24/2008) Gfarm Grid File System Lead by UTsukuba, Japan Open source development at SourceForge.net New version V is ready Tatebe-san setup Meta-server at SDSC (rocks- 45.sdsc.edu), also a file server AIST setup a file server Documented for users and site admins Need more testing and with application Avian- Flu Grid

PRAGMA 15 (10/24/2008) Tentative agenda of the breakouts Breakout 1 14:00-15:30 (today) VOMS in PRAGMA Grid (40 min) PRAGMA Data Grid (20 min) SCMSWeb (20 min) Breakout 2 14:30-16:00 (tomorrow) Reports from PRAGMA applications (40 min) –e-AIRs –Phaser –Other application talks? Introduction of A*STAR Digital Nervous System (iHPC) (20 min) –FusionCloud Open Discussions : Future direction of PRAGMA Grid (30 min) –Theme: How make it easier for all players (esp. Cindy) –Virtualization, VOMS, Portals, etc. –Supporting GEO/Tele applications