Calit2s Program in Nano-science, Nano-engineering, and Nano-medicine Invited Talk Review of Nano-cancer project April 11, 2006 Dr. Larry Smarr Director,

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Calit2s Program in Nano-science, Nano-engineering, and Nano-medicine Invited Talk Review of Nano-cancer project April 11, 2006 Dr. Larry Smarr Director, California Institute for Telecommunications and Information Technologies Harry E. Gruber Professor, Dept. of Computer Science and Engineering Jacobs School of Engineering, UCSD

UC San Diego Richard C. Atkinson Hall Dedication Oct. 28, 2005 Two New Calit2 Buildings Will Provide Major New Laboratories to Their Campuses New Laboratory Facilities –Nanotech, BioMEMS, Chips, Radio, Photonics, Grid, Data, Applications –Virtual Reality, Digital Cinema, HDTV, Over 1000 Researchers in Two Buildings –Linked via Dedicated Optical Networks –International Conferences and Testbeds UC Irvine

Nano3 Facility CALIT2.UCSD 10,000 sq. feet State-of-the-Art Materials and Devices Laboratory Calit2 Materials and Devices Laboratory: Nano3 – Science, Engineering, Medicine Source: Bernd Fruhberger, Calit2

Nano3 Facility CALIT2.UCSD Campus Recharge Facility – Operated by Professional Staff Limited Operation – April 2006 Fully Functional – September 2006 The First Shared Clean Room Facilities on the UCSD Campus Nanoscale Fabrication: –e-Beam Lithography –Optical Lithography –Advanced Dry Etching –Thin-Film Deposition –Wet Chemical Processing –Thermal Processing –Metrology –Back-end Packaging Materials Characterization: –Scanning Probe Microscopy –Scanning Electron Microscopy –UHV Surface Analysis –Diffraction –Optical Characterization Nanomedicine: –Facilitating Combined Nano/Micro Fabrication –Chemical Synthesis –Biochemical Coating Source: Bernd Fruhberger, Calit2

Calit2 Nanomedicine Lab Facilities Current Facilities: –Controlled Atmosphere Glove Boxes for Array Coating –Nanoparticle Ultrasonicator –High Sheer Vortex Emulsifier –Laminar Flow Hood –Standard Biochemical Tools Planned Facilities: –Preparative HPLC –Dip Pen Lithography or Similar Device –Fluorescence Microscope Or NSOM –Inkjet Printer or Stamp Printer –Confocal Laser Cytometer Source: Bernd Fruhberger, Calit2

NanoMedicine Lab: Current Projects Synthesis of: –Multishell Albumin and Liposomal Motherships for Delivering Nanosized Therapeutic and Imaging Agents –Albumin Shells For Delivery Of Anti-cancer Viruses Targeting Sentinel Lymph Nodes In Breast Cancer Fabrication of: –Cancer Cell Array Detector for Breast Cancer Surgical Margin Detection –Arrays for Single Cell Combined Genotyping and Phenotyping In CLL Cells –Arrays for Detection of Multiple Secretants from Single Cells –Peptide Arrays for the Detection of Cancer Antibodies Source: Bernd Fruhberger, Calit2

NanoMedicine Lab – Interface with Cleanrooms Raith50 E-beam Writing System In operation (March 2006) Example: Nanolithography Nanodimensional grid in PMMA resist e-beam Nanolithography is Used for Rapid Prototyping of Antibody Arrays to Optimize Size, Shape, and Spacing of the Antibody Coated Gold or TiO 2 Dots Source: Bernd Fruhberger, Calit2

Nano3 Facility CALIT2.UCSD NanoMedicine Lab – Interface with Materials Characterization Labs MultiMode Scanning Probe Microscope w/Nanoscope IV Controller In operation (March 2006) Example: Scanning Probe Microscopy Atomic Force Microscopy image of organometallic thin film (Cu-Phthalocyanine) Atomic Force Microscopy (AFM), Scanning Tunnel Microscopy (STM), Magnetic Force Microscopy (MFM), Surface Potential The Scanning Probe Microscope is Used for Topographical Characterization of Biochemical Coatings at the Nanoscale Source: Bernd Fruhberger, Calit2

Adapting High Resolution Displays with Live Instrument Feeds to Cancer Research Source: David Lee, NCMIR, UCSD Calit2 OptIPuter Project

PI Larry Smarr Announced January 17, 2006

Marine Genome Sequencing Project Measuring the Genetic Diversity of Ocean Microbes CAMERA will include All Sorcerer II Metagenomic Data

Flat File Server Farm TeraGrid Backplane (10000s of CPUs) W E B PORTAL Web Local Cluster Direct Access Lambda Cnxns Dedicated Compute Farm (1000 CPUs) Data- Base Farm 10 GigE Fabric Calit2s Direct Access Core Architecture Will Create Next Generation Metagenomics Server Source: Phil Papadopoulos, SDSC, Calit2 + Web Services User Environment CAMERA Complex

First Implementation of the CAMERA Complex Compute Database & Storage