Additional file 10A. Correlation plots for MAQC2 gene level brain data set using procedure 1.

Slides:

Advertisements

Similar presentations

Additional file 8A. PCA plots for MAQC2 gene level brain data set using procedure 1. PredictorNpar Fp-value length36.837

Advertisements

Additional file 11A. GAM plots for MAQC2 gene level brain data set using procedure 1.

Basic Gene Expression Data Analysis--Clustering

Introduction to the EMERALD Dataset  Ron Peterson  Anne Bergstrom Lucas, Agilent  Jean Lozach, Illumina  Marc Salit, NIST  Russ Wolfinger, SAS  Walter.

Selection of XID(Btk) site specific I-AniI variant for gene repair in hematopoietic stem cells Yupeng Wang Rawlings Lab Center for Immunity and Immunotherapy.

RNA Lab (Isolation, quantification and qPCR analysis) MCB7300.

Bad Strips for DC2 Leon R. Calibration and Analysis Mtg July 11, 2005.

1. visit to IRIS PAGE from

Rules for means Rule 1: If X is a random variable and a and b are fixed numbers, then Rule 2: If X and Y are random variables, then.

1 Is Gene Position Adaptively Favored?. 2 Why do we care? Genomic clusters of genes Yeast 98% of genes in metabolic pathways cluster (Lee & Sonnhammer)

RNA-Seq An alternative to microarray. Steps Grow cells or isolate tissue (brain, liver, muscle) Isolate total RNA Isolate mRNA from total RNA (poly.

EXAMPLE 1 Describe the correlation of data Describe the correlation of the data graphed in the scatter plot. a. The scatter plot shows a positive correlation.

Site Protocol component NMD inhibitor Cyclo- heximide 100  g/ml 4hrs no cell culture Cyclo- heximide 100  g/ml.

Working Late cant-afford/story-fn6bn88w

23.2: Hardy- Weinberg Equation can be used to Test Whether a Population is Evolving Ben Lee.

Your health and the health of the environment depend on your knowledge of biology.

 Graph of a set of data points  Used to evaluate the correlation between two variables.

CELL IMAGE ACTIVITY Draw each image of cells and write 2-3 observations. When done, compare the animal cells and plant cells. (Yes, humans ARE animals.)

Linear Regression Analysis Using MS Excel Tutorial for Assignment 2 Civ E 342.

1 Thinking Critically with Psychology. 2 Research methods 4 Survey 4 Case study –E.g. Stroke victim 4 Experimentation 4 Naturalistic Observation –Observing.

Chapters 2 & 3 MATLAB Skills This tutorial revisits Examples 3.1 to 3.4 to show how MATLAB can be used to solve the same problems 1.Scatter Plots 2.Other.

 Kidney  Pancreas  Liver  Heart 1954 by Murray/Harrison 1966 by Lillehei 1967 by Starzl 1968 by Barnard.

Lesson Aims We will know how bodies are built. We will know that cells are the key building block of all organisms Draw the following organs on the body.

So why take biology?. Your health and the health of the environment depend on your knowledge of biology. Knowledge of biology helps you understand your.

Biases in RNA-Seq data. Transcript length bias Two transcripts of length 50 and 100 have the same abundance in a control sample. The expression of both.

Objectives Differentiate between somatic (body) cells and gametes. Compare and contrast diploid and haploid.

Scatter Plots. Scatter plots are used when data from an experiment or test have a wide range of values. You do not connect the points in a scatter plot,

Additional File 4. Relationships between numbers of probes remaining after masking and rates of evolution. For each tissue and species, the number of 1H_1C.

Case study: Saccharomyces cerevisiae grown under two different conditions RNAseq data plataform: Illumina Goal: Generate a platform where the user will.

Blood Pressure and Mean Arterial Pressure It’s all about perfusion!

Scatter Plots & Lines of Best Fit To graph and interpret pts on a scatter plot To draw & write equations of best fit lines.

Scatter Plots. Standard: 8.SP.1 I can construct and interpret scatterplots.

Using Appropriate Displays. The rabbit’s max speed is easier to find on the ________. The number of animals with 15 mph max speed or less was easier to.

$100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300.

Candida Albicans is a yeast infection that starts in the digestive system and can spread to other parts of the body if it is not controlled before that.

Case study: Saccharomyces cerevisiae grown under two different conditions RNAseq data plataform: Illumina Goal: Generate a platform where the user will.

Equation for a Vertical Line and a Horizontal Line

Figure S2 A B Log2 Fold Change (+/- cAMP) Transcriptome (9hr)

Company Registration: Procedure that one needs to follow Company Registration: Procedure that one needs to follow

Figure 6.1. Plot of the Swiss franc exchange rate

دانشیار دانشکده دندانپزشکی دانشگاه علوم پزشکی شهید صدوقی یزد

RT-PCR Analysis of RNA Extracted from Bouin-Fixed and Paraffin-Embedded Lymphoid Tissues Annunziata Gloghini, Barbara Canal, Ulf Klein, Luigino Dal Maso,

Correlation of log-transformed signal intensity from two Affymetrix microarray hybridizations using platelet RNA. Plotted are those probesets with an average.

Notes Over 2.5 Positive Correlation Determining Correlation x

A B 1 (5,2), (8, 8) (3,4), (2, 1) 2 (-2,1), (1, -11) (-2,3), (-3, 2) 3

Correlation between the ability of Novosphingobium strains from four different habitats to degrade aromatic and xenobiotic compounds. Correlation between.

The Desirability of Control

AGENDA – Measuring Biodiversity Lab (See me if you are absent)

Miao-Xin Li, Hong-Sheng Gui, Johnny S.H. Kwan, Pak C. Sham

Plotting Points © T Madas.

Neuroplasticity: Our brain changes in response to experience and response to training. Epigenetcs: Gene expressions Bidirectional communication between.

Full of ingredients to make your child a genius.

Тархи ба оюун \Brain and Mind\

Volume 16, Issue 8, Pages (August 2016)

Volume 88, Issue 4, Pages (November 2015)

Project Assignment – Report (May 1)

UNIT-3. Random Process – Temporal Characteristics

Descriptive Statistics Univariate Data

Residuals (resids).

EXP file structure.

RNA abundance correlates with fitness.

Increased expression levels of CHIT1 in the patients with IPF where they correlate inversely with SMAD7. Increased expression levels of CHIT1 in the patients.

No correlation between the distance of the duplicated alleles and the transcription levels on each of the alleles. No correlation between the distance.

Comparison ofMyc-induced zebrafish liver tumors with different stages of human HCC and seven mouse HCC models. Comparison ofMyc-induced zebrafish liver.

Plotting Points © T Madas.

RANDOM NUMBERS SET # 1:

A and B, linearity of the preamplification step shown by a similar expression pattern of ERα mRNA in four breast tumor samples pre– and post–linear amplification.

Presentation transcript:

Additional file 10A. Correlation plots for MAQC2 gene level brain data set using procedure 1.

Additional file 10B. Correlation plotsfor MAQC2 gene level UHR data set using procedure 1.

Additional file 10C. Correlation plots for Marioni liver data set using procedure 2.

Additional file 10D. Correlation plots for Marioni kidney data set using procedure 2.

Additional file 10E. Correlation plots for FRT-Seq data set using procedure 2.

Additional file 10F. Correlation plots for Lee35 yeast data set using procedure 1.

Additional file 10G. Correlation plots for Nagalakshmi oligo dT yeast data set using procedure 1.

Additional file 10H. Correlation plots for Nagalakshmi random hexamer yeast data set using procedure 1.