© NIH National Center for Image-Guided Therapy, November, 2008 System Set-up for the Integration of BrainLab, BioImage Suite and Slicer3 Haiying Liu Surgical.

Slides:

Advertisements

Similar presentations

NCIGT NIH National Center for Image-Guided Therapy System Test for the Integration of Brainlab, BioImage Suite and Slicer3 Haiying.

Advertisements

© NIH National Center for Image-Guided Therapy, November, 2008 Visualization of DTI Tractography while Tracking by BrainLab System Haiying Liu Surgical.

System Set-up for the Integration of

© NIH National Center for Image-Guided Therapy, November, 2008 System Set-up for the Integration of BrainLab, BioImage Suite and Slicer3 Haiying Liu Surgical.

© NIH National Center for Image-Guided Therapy, November, 2008 System Test for the Integration of Brainlab, BioImage Suite and Slicer3 Haiying Liu Surgical.

Tokuda, J National Alliance for Medical Image Computing NA-MIC© 2010, ARR Connecting IGT Device with OpenIGTLink Junichi Tokuda, PhD Slicer3 Training Compendium.

Networking By: Matt Motl… Programmer Brent Everson… Programming Mentor.

3D Slicer in Image Guided Therapy Nobuhiko Hata, PhD Brigham and Women’s Hospital.

Ver AB Terms Host: The computer to be tested Gateway: The router connected to that part of the network PDU: Protocol Data Unit Perform Network Fault.

Intraoperative Visualization of White Matter Tracts During Brain Tumor Resection Haytham Elhawary, Ph.D Postdoctoral Research Fellow March 19 th 2010.

Managing Your Network Environment © 2004 Cisco Systems, Inc. All rights reserved. Managing Cisco IOS Devices INTRO v2.0—9-1.

Basic Network Concepts And Troubleshooting. A Simple Computer Network for File Sharing.

SIS - Security Lab Introductory Session University of Pittsburgh 2006.

Network Printing. Printer sharing Saves money by only needing one printer Increases efficiency of managing resources.

DHP-306AV & DHP-W306AV. Agenda: How to change Encryption on a DHP-306AV How to change the Device Password on a DHP-306AV What will happen if the Device.

 General notes/quirks › Letters only in the SSID › g & b only › Use a different router for internet and robotics › Use a simple password.

Installing Ricoh Driver. Items you need to know IP address of Printer Options that are installed And Paper Sizes To get all this information you can print.

RADIUS Server (Brocade Controller)

Dainis Krakops’ Wireless Network MOTOROLA SURFboard SB5101 CABLE MODEM Enables cable operators to provide broadband Internet connection for my LAN devices.

How to connect your laptop to the classroom wireless AP.

Installing Active Directory on Windows Server 2008 R2 Installing Active Directory on a fresh Windows Server 2008 R2 machine in a home network. These instructions.

Installing a DHCP Server role on Windows Server 2008 R2 in a home network. This is intended as a guide to install the DHCP role on a Domain Controller.

Connecting To A Remote Computer Via ‘Remote Desktop Web Connection’ Compatible With ‘Most Any’ Computer.

One to One instructions Installing and configuring samba on Ubuntu Linux to enable Linux to share files and documents with Windows XP.

Building a Switch-based Network

TUTORIAL # 2 INFORMATION SECURITY 493. LAB # 4 (ROUTING TABLE & FIREWALLS) Routing tables is an electronic table (file) or database type object It is.

ActEyes IP Cam Training Part 1: Camera Setup. Network Setup Overview Each IP Cam on the network will need its own IP address to be assigned. This address.

© 2007 Cisco Systems, Inc. All rights reserved.ICND2 v1.0—1-1 Small Network Implementation Introducing the Review Lab.

Microsoft Internet Security and Acceleration (ISA) Server 2004 is an advanced packet checking and application-layer firewall, virtual private network.

Lab How to Use WANem Last Update Copyright 2011 Kenneth M. Chipps Ph.D. 1.

Objectives Define IP Address To be able to assign an IP address with its Subnet Mask and Default Gateway to a PC that operates using Windows 7 or Fedora.

Lexmark Wireless Printer Adaptor Instructions Step 1. For a Mac, go to network preferences/ select built-in-ethernet and click on TCP/IP tab and annotate.

Special Project Group 03 Chintan Shah Nisharg Patel Cynthia York.

Creating a Web Site to Gather Data and Conduct Research.

NA-MIC National Alliance for Medical Image Computing Why NITRC Matters to NA-MIC Steve Pieper, PhD.

0Gold 11 0Gold 11 LapLink Gold 11 Firewall Service How Connections are Created A Detailed Overview for the IT Manager.

Network Management Tool Amy Auburger. 2 Product Overview Made by Ipswitch Affordable alternative to expensive & complicated Network Management Systems.

Programming Software and Setting. if forget the IP address of SB-DN-1IP, programmer can press the reset button till the led goes red, then it is reset.

NA-MIC National Alliance for Medical Image Computing OpenIGTLink Update NA-MIC Summer Project Week 2010 Junichi Tokuda, Ph.D. Department.

IPad Remote Control w. Splashtop 2 3Shape TRIOS ®.

EInstruction Tips Mike Kilburn Tech Day Adding Tools to your main menu Open workspace Go to workspace menu Choose Preferences Choose Customize Toolbar.

Nat Type Change Speed Touch and Thomson Modems. Steps Disable uPNP Static Ip on Console Putty Download Telnet Procedure.

DHP Agenda: How to Access Web Interface of the DHP-1320 on Access Point Mode How to Access Web Interface of the DHP-1320 on Router Mode How to Change.

Information Security 493. Lab # 4 (Routing table & firewalls) Routing tables is an electronic table (file) or database type object that is stored in a.

OpenIGTLink Junichi Tokuda 1 1 Brigham and Women’s Hospital / Harvard Medical School, Luis Ibanez 2, Csaba Csoma 3, Patrick Cheng 4, Haiying Liu 1, Jack.

Quick guide to ASIMON configuration For version 3.0 or greater SAFETY AT WORK Date: 3/18/2009.

A guide to file sharing on Windows XP Peer to Peer File Sharing.

Go to Start >> Programs >> Outlook Express ( as shown)

SIS - Security Lab Introductory Session University of Pittsburgh 2008.

Programming Software and Setting. Default IP Add ： , also can be changed via Programming Software, if forget IP address, Programmer can.

NA-MIC National Alliance for Medical Image Computing Slicer Progress in 2009 Steve Pieper, Ph.D.

Remote Access Using a Netgear DG834 Router 1http://

How to Use LINCWorks as a Wireless Repeater For additional help please contact: Paul Peterson

Slicer 101 IGT Edition Haiying Liu, M.S. Nobuhiko Hata, Ph.D.

LAN Connections.

beas group AG Beas sql guide Martin Heigl CTO

Basic router configuration

Ron Kikinis, MD Professor of Radiology, Harvard Medical School

Configuration of Cisco Routers in GNS3

Setup Of 4050 EIP To Control LOGIX PLC

Net 412 (Practical Part) Networks and Communication Department LAB 1.

How to add Loopback adapter in windows 7

Fundamentals of Computer Networks

How to output NW camera picture to external monitor.

Configuring Server to communicate with CET meters (Ethernet)

2006 Summer PrWeek Slicer3 for Image Guided Therapy (IGT): Convert vtkMRAblation and vtkFMRIEngine to Slicer3 modules. Team Plan/Expected Challenges/Publication.

RapidFinder Analysis Software How-To Guide

Completing the Primary Reference portion of the Student Profile

How to install and manage exchange server 2010 OP Saklani.

Presentation transcript:

© NIH National Center for Image-Guided Therapy, November, 2008 System Set-up for the Integration of BrainLab, BioImage Suite and Slicer3 Haiying Liu Surgical Planning Lab Brigham & Women's Hospital Harvard Medical School

© NIH National Center for Image-Guided Therapy, November, 2008 Acknowledgements National Center for Image Guided Therapy NIH U41RR NEDO Intelligent Surgical Instruments Project

© NIH National Center for Image-Guided Therapy, November, 2008 The Team Haiying Liu, BWH Noby Hata, BWH Alex Golby, BWH Junichi Tokuda, BWH Steve Pieper, Isomics Xenios Papademetris, Yale Pratik Patel, BrainLab AG

© NIH National Center for Image-Guided Therapy, November, 2008 Outline Overview of the system Wire computers by router Configure BrainLab Configure BioImage Suite Connect BioImage Suite to BrianLab Connect BioImage Suite to Slicer3

© NIH National Center for Image-Guided Therapy, November, 2008 System Overview BioImage Suite BrainLab Slicer3 VVLink OpenIGTLink BioImage Suite is a bridge between Slicer3 and BrainLab. BrainLab sends tracking data and images to BioImage Suite on VVLink. BioImage Suite relays the data to Slicer3 on OpenIGTLink.

© NIH National Center for Image-Guided Therapy, November, 2008 Wire Computers by Router Power on the BrainLab system. Power on the computer running both Slicer3 and BioImage Suite. Power on the router. Connect the BrainLab system with the router with an Ethernet network cable. Connect the Slicer computer with the router with an Ethernet network cable.

© NIH National Center for Image-Guided Therapy, November, 2008 Wire Computers by Router Assign a static IP address for the BrainLab system. Assign a static IP address for the Slicer computer. ping Test the connectivity between the BrainLab system and the Slicer computer by using ping command in a command prompt (for Windows) or a terminal (for Linux) like: ping ip-address make sure you have response from the other computer.

© NIH National Center for Image-Guided Therapy, November, 2008 Configure BrianLab On BrainLab interface (see next slide), get to Tools->VV Link. Activate VV Link by clicking the button in the middle. This may need a license. If VV Link is activated, you should see a square as the border for the button. Write down the password in the red oval. The password may not be always the same.

© NIH National Center for Image-Guided Therapy, November, 2008 Configure BrianLab (From Xenophon Papademetris, Yale University) Left click this button to activate VVLink Save this password for later use

© NIH National Center for Image-Guided Therapy, November, 2008 Configure BioImage Suite Left click to bring Preferences Widget up (next slide)

© NIH National Center for Image-Guided Therapy, November, 2008 Configure BioImage Suite 1. Enable OpenIGTLink and VectorVisionLink 2. Left click to save Preferences 3. Left click to close this widget and then exit BioImage Suite

© NIH National Center for Image-Guided Therapy, November, 2008 Configure BioImage Suite Start BioImage Suite again. Check and make sure both OpenIGTLink and VectorVisionLink are enabled. If not, turned them into Enabled.

© NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to BrianLab 1. Left click the Neurosurgery button 2. Left click to bring the VVLink/OpenIGTLink widget

© NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to BrianLab Left click to bring up the VVLink Tool widget (next slide)

© NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to BrianLab 1. Left click to a new server (BrainLab system) 2. Input the IP address of the BrainLab system 4. Left click to add server 3. Input the password saved before

© NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to BrianLab 1. The added server should be listed here. Make it visible 2. Left click to connect 3. If the connection succeeds, on both sides, you will see a confirmation message. Click OK button to confirm.

© NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to Slicer3 Choose OpenIGTLink IF module and then click the Connectors tab

© NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to Slicer3 1. Left click to add a new connector 2. Check it as server 3. Check it as active

© NIH National Center for Image-Guided Therapy, November, 2008 Connect BioImage Suite to Slicer3 1. Input the server (Slicer3) name or its IP address and port number 2. Left click to connect 3. Confirmation message after pressing Connect button