Educational Activities in Cheminformatics at IU Gary Wiggins

Slides:



Advertisements
Similar presentations
Indiana University Chemical Informatics Programs Gary Wiggins
Advertisements

1 Use of Wikis and Macromedia Breeze in Chemical Information and Cheminformatics Instruction at Indiana University Gary Wiggins Indiana University School.
From Chemical Information to Cheminformatics: Graduate Programs at Indiana University Gary Wiggins School of Informatics May 21, 2007.
Educational Opportunities in Cheminformatics at IU Gary Wiggins
1 Overview of Chemical Informatics and Cyberinfrastructure Collaboratory Aug Geoffrey Fox Computer Science, Informatics, Physics Pervasive Technology.
School of Natural and Social Sciences Dr. Robert T. Kasper, Dean –Natural Sciences: Biology, Chemistry/Physical Science –Social Sciences: Psychology,
Supercomputing Institute for Advanced Computational Research © 2009 Regents of the University of Minnesota. All rights reserved. The Minnesota Supercomputing.
1 Challenges and New Trends in Data Intensive Science Panel at Data-aware Distributed Computing (DADC) Workshop HPDC Boston June Geoffrey Fox Community.
College 101. Advisory Development Table of Contents DateTitle Page # 11/17/11Resolving Conflicts Wisely16 11/28/11Mini Math Lesson17 12/01/11Learning.
Education, Outreach and Training. Specifications Document Overall objective: Better integration of ecoinformatics, in general, and SEEK tools, specifically,
American Chemical Society Undergraduate Curriculum and the ACS Guidelines Anne McCoyClark Landis Ohio State University of Wisconsin The evolution of the.
Educational Activities in Cheminformatics at IU Gary Wiggins
Orientation Kick-Off May 9, 2014 Updates on General Education Core, Degree Maps, and other Emerging Technologies.
Personalia: Pre-Sheffield Batchelor’s degree in Chemistry at Oxford Pre-university job in my local public library system Chemistry or information science?
Department of Mathematics and Computer Science
Educational Programs in Bioinformatics at UNO Hesham H. Ali Department of Computer Science College of Info Science and Technology University of Nebraska.
Chemical Informatics and Bioinformatics Programs at Indiana University Gary Wiggins School of Informatics Indiana University ACS, Philadelphia, 23 August.
Jeffery Loo NLM Associate Fellow ’03 – ’05 chemicalinformaticsforlibraries.
MS DB Proposal Scott Canaan B. Thomas Golisano College of Computing & Information Sciences.
Curriculum Overview School of Information and Library Science University of North Carolina at Chapel Hill BW.
Education of Chemistry Librarians and Chemical Information Specialists in the Age of Informatics Charles Davis and Gary Wiggins Indiana University.
NICLS: Development of Biomedical Computing and Information Technology Infrastructure Presented by Simon Sherman August 15, 2005.
Communication, Culture and Information Technology University of Toronto Undergraduate programs in new media and technology Bill Thompson Director: CCIT.
School of Engineering and Design University of Bridgeport School of Engineering and Design University of Bridgeport School Overview.
Bachelor of Science in Information Technology California State University Channel Islands.
Department of Chemistry and Biochemistry Guidance Counselor Advisory Board Winter Meeting December 4, 2009 Dean H. Johnston, Ph.D.
Curriculum Overview School of Information and Library Science University of North Carolina at Chapel Hill BM.
Master of Arts in Data Science Geoffrey Fox for Data Science Program March
The Indiana University School of Informatics Bobby Schnabel: Dean, Indiana University School of Informatics Presented by Geoffrey Fox: Associate Dean for.
The Indiana University School of Informatics Bobby Schnabel: Dean, Indiana University School of Informatics Presented by Geoffrey Fox: Associate Dean for.
Master of Arts in Data Science
New Degree Program in BIOMEDICAL PHYSICS. What is Biomedical Physics? Biomedical Physics: - Applications of physics to biology and medicine. Molecular.
David L. Spooner1 IT Education: An Interdisciplinary Approach David L. Spooner Rensselaer Polytechnic Institute.
Computer Science Graduate Programs at UTSA Dr. Weining Zhang.
Changing the Way Research is Done: Advances in Chemical Information Science and Cheminformatics Gary Wiggins 25 th Anniversary Chemistry Librarianship.
Bachelor of Science in Information Technology California State University Channel Islands.
1 Gary Wiggins for Geoffrey Fox April 30, 2007 Computer Science, Informatics, Physics Pervasive Technology Laboratories Indiana.
AFCEA/AFA July 23,  There are 35 colleges and universities across the state that are members of the University System of Georgia.  All of them.
Continuing Education for Biological and Life Sciences Librarians in the Post- Genomic Era You CAN Teach an Old Dog New Tricks Frederick W Stoss University.
Structure of Study Programmes
Computer Science Graduate Studies in U of Memphis.
Positioning HCI within an ILS program Presented by Barbara M. Wildemuth.
Dr. John Lowther, Associate Professor of CS Adjunct Associate Prof. of Cognitive and Learning Sciences Computer Graphics:
Human Relations Concentration COM 100 Professor Steve Wilson Oct
Department of Computer and Information SciencesMay 5th, 2004 HOMMER: Holistic Model for Minority Education & Research.
Teaching a Distance Learning Course Presented by David R. Maidment, Dept of Civil Engineering University of Texas at Austin 20 January 1999 Concepts of.
1 WORKSHOP ON COMPUTER SCIENCE EDUCATION Innovation of Computer Science Curriculum in Higher Education TEMPUS project CD-JEP 16160/2001.
Advising Session: Spring 2008 Computer Science Software Engineering Computer Systems Science 1.
Distributed Medical Informatics Education Using Internet2 William Hersh, M.D. Associate Professor and Chief Division of Medical Informatics & Outcomes.
Computer Sciences at NYU Open House January 2004 l Graduate Study at New York University l The MS in Computer Sciences l The MS in Information Systems.
CHEMINFO and Groth: The Web and Chemistry Gary Wiggins Chemistry Library IU Forum on Digital Libraries April 16, 2002.
UIC College of Engineering Six Academic Departments with Graduate and Undergraduate Programs Bioengineering, Chemical Engineering, Civil & Materials Engineering,
Information Science &Technology at Mercer University August 22, 2001.
1 Overview of Chemical Informatics and Cyberinfrastructure Collaboratory October Geoffrey Fox Computer Science, Informatics, Physics Pervasive.
GRADUATE PROGRAMS. Chemistry M.S The Chemistry M.S. at the University of Central Florida is aimed at preparing students for careers in the chemical industry.
Chemical Informatics and Cyberinfrastructure Collaboratory An NIH-Funded Exploratory Center for Cheminformatics Research Project of the IU School of Informatics.
Indiana University School of Indiana University ECCR Summary Infrastructure: Cheminformatics web service infrastructure made available as a community resource.
Creating a Seamless Transfer Casey C. Turnage, Ph.D. Director of Policy and Strategic Initiatives MS Institutions of Higher Learning.
Liberal Arts & Sciences Meeting current needs Access to education for all UI students Foundational academic disciplines Interdisciplinary synergy Student.
Accelerated B.S./M.S An approved Accelerated BS/MS program allows an undergraduate student to take up to 6 graduate level credits as an undergraduate.
Department of Computer and Information Sciences
Chemical Informatics and Cyberinfrastructure Collaboratory
Information Science &Technology at Mercer University
Gary Wiggins for Geoffrey Fox
Computer Science Assessment Plan Overview
Use of Wikis and Macromedia Breeze in Chemical Information and Cheminformatics Instruction at Indiana University Gary Wiggins Indiana University School.
What is Chemical Informatics?
New Ms and BS Chemical Informatics Programs
Gary Wiggins Chemistry Library Indiana University
Teaching Undergraduate Science Labs Worldwide
Presentation transcript:

Educational Activities in Cheminformatics at IU Gary Wiggins

Overview Recent developments Formal courses Degree programs Graduate certificate program Guide to web resources Collaborative work on educational modules

Formal Courses Undergraduate courses I371 Chemical Informatics (1 cr. hour) I372 Molecular Modeling (2 cr. hours) Introductory graduate courses I571 Chemical Information Technology I572 Computational Chemistry and Molecular Modeling I573 Programming for Science Informatics I617 Informatics in Life Sciences and Chemistry (core PhD course for non-majors) Seminars I533 Chemical Informatics Seminar I647/I657 Advanced Chemical Informatics Seminar I-II

Recent Developments - 1 Enrollment data in the period of the NIH grant 96 students have taken at least one cheminformatics course since August of them (30 percent) accessed the courses through distance education means 17 DE students in I571 9 CIC CourseShare students in I571 2 DE students in I571 1 DE student in I573

Recent Developments - 2 Enrollment by Courses, (August 2005 – present, across both campuses) I/C3719 I/C37214 I5336 I57144 I57212 I5735 I5902 I6474 TOTAL96

Recent Developments - 3 BCCE workshop on cheminformatics, July 30 Ongoing work with Mesa Analytics on the Cheminformatics Virtual Classroom Graduate Certificate in Chemical Informatics

Cheminformatics Seminar I533 Seminar in Chemical Informatics Spring 2006 Topic: Molecular Informatics, the Data Grid, and an Introduction to eScience

I647 & I657 Advanced Chemical Informatics Seminars I-II Topics vary yearly and include: representation of chemical compounds representation of chemical reactions chemical data, databases and data sources searching chemical structures calculation of physical and chemical data (molecular mechanics and quantum mechanics) calculation of structure descriptors methods for chemical data analysis integration of cheminformatics and bioinformatics Fall 2006 topic: Bridging Bioinformatics and Chemical Informatics

Degree Programs: BS and MS BS degree 34 credit hours of Informatics courses Cognate area, usually a minor in areas such as chemistry, biology, computer science, fine arts, business, etc. MS degree: 36 semester hours IUB: Bioinformatics, Chemical Informatics, Human- Computer Interaction IUPUI: also New Media, Health Informatics, Laboratory Informatics Includes a 6-hour capstone/research project

Unique MS Program at IUPUI Laboratory Informatics at IUPUI Instrumentation and data interfacing Laboratory notebooks Laboratory Information Management Systems (LIMS)

Degree Programs: PhD in Informatics Began in August 2005 The 90 hours of credit for the PhD in Informatics (cheminformatics track) consist of: 27 hours of required informatics courses I501 Introduction to Informatics (3 cr.) Core informatics courses (9 cr.) Seminars in the cheminformatics track (6 cr.) Professionalism/Pedagogy course (3 cr.) Research Rotation (6 cr.) 12 hours in theory or methodology courses (or credits from an MS degree) 21 hours of electives (or credits from an MS degree) 30 hours of dissertation research.

Concentration Areas for the PhD in Informatics Tracks: bioinformatics; chemical informatics; health informatics; human-computer interaction design; social and organizational informatics Under development: complex systems, networks, modeling and simulation; cybersecurity; discovery and application of information; logical and mathematical foundations; music informatics

Other Educational Activities Experiments with teleconferencing as a distance education tool I571 as CIC CourseShare offering Distributed Drug Discovery database for organic chemistry laboratory course at IUPUI Graduate Certificate in Chemical Informatics

Requirements: 4 courses; each 3 cr. hours I571 Chemical Information Technology I572 Computational Chemistry and Molecular Modeling I573 Programming for Science Informatics I553 Independent Study in Chemical Informatics Available to on-site IUB/IUPUI and Distance Education students

General Cheminformatics Resources Academic Programs Chemistry Databases on the Web Professional Societies and Groups Companies and Independent Institutions Publications and Conferences Data Standards and Standards Groups Molecular Visualization Tools and Sites Web Services Technology Resources Other Guides to Cheminformatics Resources

Training Modules for Chemical Informatics Instruction Mesa Analytics Cheminformatics Virtual Classroom

END

Software/DBs Used in the Program Company Products and/or (Target Area) ArrgusLab(Molecular modeling) Digital Chemistry (formerly, BCI)Toolkit (Clustering) Cambridge Cryst Data CenterCambridge Structrual DB & GOLD CambridgeSoftChemDraw Ultra Chemical Abstracts ServiceSciFinder Scholar ChemaxonMarvin (and other software) Daylight Chemical Info SystemToolkit FIZ KarlsruheInorganic Crystal Structure DB IO-InformaticsSentient MDLCrossFire Beilstein and Gmelin OpenEyeToolkit (and other software) Sage InformaticsChemTK Serena SoftwarePCmodel SpotfireDecisionSite STN InternationalSTN Express with Discover (Anal Ed) WavefunctionSpartan

Core and Affiliated Faculty MU-HYUN BAIK KELSEY FORSYTHE GEOFFREY C. FOX SANTIAGO SCHNELL DAVID J. WILD DIMITRIS AGRAFIOTIS (adjunct) JOHN M. BARNARD (adjunct) DONALD B. BOYD (affiliated) ROBERT D. CLARK (adjunct) DAVID E. CLEMMER (adjunct) CHARLES H. DAVIS (affiliated) THOMPSON N. DOMAN (adjunct) KEVIN E. GILBERT (affiliated) GARY M. HIEFTJE (adjunct) JOHN C. HUFFMAN (adjunct) PETER J. ORTOLEVA (adjunct) GARY D. WIGGINS (adjunct) FAMING ZHANG (affiliated)

Outreach Activities Research relationships with IU School of Medicine IUB/IUPUI bioinformatics and proteomics research programs Commercial firms through internships (LeadScope, Rosetta Inpharmatics, Lilly, etc.)

Why IU for Chemical Informatics? Outstanding Faculty Excellent computer facilities and infrastructure Close proximity to major pharmaceutical companies (Lilly, Abbott, Pfizer) and to chemical informatics companies (Tripos, LeadScope, Chemical Abstracts Service) History of innovative, IT-based chemical information services (QCPE, MSC) Complementary programs in IUs School of Library and Information Science (SLIS)

Introducing Graduate Students to Cheminformatics Research I571, I572, and seminar projects Research rotations of PhD students RA assignments