Identifying research resources should be easy Anita Bandrowski, UCSD.

Slides:



Advertisements
Similar presentations
SCOPUS Searching for Scientific Articles By Mohamed Atani UNEP.
Advertisements

A Guide to Using Partner Publishers Resources (module 3)
Content Management Systems. What is Content Management?  Content management is a process and/or software application used by groups to plan, create,
Introduction to Mendeley. What is Mendeley? Mendeley is a reference manager allowing you to manage, read, share, annotate and cite your research papers...
“Facts are stubborn things, but statistics are pliable.”
DNAGENOMICS  RNAFUNCTIONAL GENOMICS  PROTEIN PROTEOMICS  STRUCTUREFUNCTIONAL PROTEOMICS.
References: Online Sources APA format Created by Andrea Dottolo, Ph.D., Department of Psychology, University of Massachusetts, Lowell 1.
How to Submit a Matching Gifts Application.
NATIONAL LIBRARY OF MEDICINE PubMed Central Brooke Dine National Library of Medicine Medical Library Association Conference May 2005.
1.)Please visit to begin this tutorial. Note: You must register with MY NCBI before beginning tutorial. Registration is free.
The Best Zoo Web Programming money can't buy. That's right. You can't buy web programming like this. That's why we're giving it away for free!!!
Publishing Research Papers Charles E. Dunlap, Ph.D. U.S. Civilian Research & Development Foundation Arlington, Virginia
A Guide to Using Partner Publishers’ Resources (module 3)
ELSEVIER SCIENCE ( LIFE SCIENCE-CURRENT OPINIONS, TRENDS, FUELLRESS )
Maryann E. Martone, Ph, D, Neuroscience Information Framework University of California, San Diego.
A tutorial on how to compute H-index using Web of Science database.
NEUROSCIENCE INFORMATION FRAMEWORK antibodyregistry.org An antibody registry for biological sciences Illuminating dark data, one antibody at a time Image.
NEUROSCIENCE INFORMATION FRAMEWORK scicrun.ch/resources The case of the missing research resources Illuminating dark data, one antibody at a time Image.
Setting up a Profile LRC Information Literacy Series: 7 (Google Scholar Citations) By Shri Ram.
Domain Name System | DNSSEC. 2  Internet Protocol address uniquely identifies laptops or phones or other devices  The Domain Name System matches IP.
Identifying research resources should be easy Anita Bandrowski, representing the RII team.
MyFloridaMarketPlace Roundtable August 20, 2003 MyFloridaMarketPlace.
New Crossroads Transitions & Transformations Science Librarians in the 21st Century Mary M. Case University of Illinois at Chicago.
Building a XanEdu CoursePack Copyright 2004 ProQuest Information and Learning Company. All rights reserved.
How to Use Google Scholar An Educator’s Guide
Community Engagement Maryann E. Martone, Ph. D. President, FORCE11.
Passive vs. Active voice Carolyn Brown Taller especializado de inglés científico para publicaciones académicas D.F., México de junio de 2013 SELECTING.
Complying with the NIH Public Access Policy: Depositing manuscripts in PubMed Central Julie Speer, Lori Critz, Michelle Powell Office of Organizational.
What does Elsevier count? Use Measures for Electronic Resources: Theory & Practice ALCTS Program, ALA, Chicago Daviess Menefee Director, Library Relations,
Core Publisher: Creating Programs & Podcasts. Training 1: Site Administration Training 2: Programs Training 3: Content Tagging Training 4: Creating Posts.
©2006, CSA Creating and Managing Your COS Expertise Profile Managing Your CV and Promoting Your Work ® Resources for Research, Worldwide.
Springerlink.com Introduction to SpringerLink springerlink.com.
Making the most of your Subscriptions Greta Boonen, Senior Account Manager Louise Breinholt,
English 115 GoogleScholar/ OneSearch Hudson Valley Community College Marvin Library Learning Commons 1.
Identifiers: what are they and why are they useful? Anita Bandrowski, UCSD.
Part 1 – PubMed Interface, Display options, Saving, Printing, and ing results. Instructions This part of the course is a PowerPoint demonstration.
New Web Portal for Digital (PKI) Submissions 1. What is PKI? PKI stands for Public Key Infrastructure For the purpose of the Federal Register, it allows.
OARE Module 5A: Scopus (Elsevier). Table of Contents About Scopus (Elsevier) Using Scopus Search Page Results/Refine Search Pages Download, PDF, Export,
Portal User Group Meeting June 13, Agenda I. Welcome II. Updates on the following: –Migration Status –New Templates –DB Breakup –Keywords –Streaming.
Documentation in MLA Format
WEBGRANTS.COMMUNITY.UTAH.GOV Division of Housing & Community Development.
PearsonAccess April 14, PearsonAccess – Agenda Order Tracking Additional Orders Student Data Upload (SDU) files New Student Wizard Online Testing.
BRIAN A. HITSON ASSOCIATE DIRECTOR OFFICE OF SCIENTIFIC AND TECHNICAL INFORMATION OFFICE OF SCIENCE U.S. DEPARTMENT OF ENERGY JANUARY 29, 2013 Improving.
Some Free Resources on the Internet for Introducing Chemical Information Steven P. Wathen Siena Heights University Adrian, Michigan.
Nicole A. Vasilevsky 1, Matthew Brush 1, Holly Paddock 2, Laura Ponting 3, Shreejoy Tripathy 4, Greg LaRocca 4, Melissa A. Haendel 1 1 Ontology Development.
ESSENTIAL SCIENCE INDICATORS (ESI) James Cook University Celebrating Research 9 OCTOBER 2009 Steven Werkheiser Manager, Customer Education & Training ANZ.
The Uniform Resource Layer Anita Bandrowski Neuroscience Information Framework.
Weaving Data into the Scholarly Information Network UNECE Work Session on the Communication of Statistics OECD Conference Centre, Paris June 30 - July.
PubMed Review MLA 2005 San Antonio, Texas. 15 Million Milestone million citations in PubMed million citations in PubMed 13+ million citations.
PRO and the NIF / ImmPort Antibody Registries Alexander Diehl Protein Ontology Workshop 6/18/14.
PubMed/How to Search, Display, Download & (module 4.1)
PubMed/How to Search, Display, Download & (module 4.1)
The Uniform Resource Layer Anita Bandrowski Neuroscience Information Framework.
How to enter student requests in student portal. Use this URL:
SCIENCE AND TECHNOLOGY RESEARCH PAPER Databases. CONROE ISD DATABASES Yes – you can access the databases from home… Go to: Yes – you can access the databases.
Roger Mills February don’t be evil stand on the shoulders of giants.
MARKO ZOVKO, ACCOUNT MANAGER STEPHEN SMITH, SOLUTIONS SPECIALIST JOURNALS & HIGHLY-CITED DATA IN INCITES V. OLD JOURNAL CITATION REPORTS. WHAT MORE AM.
PubMed Overview From the main HINARI webpage, we can access PubMed by clicking on Search HINARI journal articles through PubMed (Medline). Note: If you.
Critical Step Web Site Presentation. Ing. Carlo Sanghez Consorzio Interuniversitario Nazionale per l'Informatica Napoli,
OARE Module 5A: Scopus (Elsevier)
Summon - HINARI Search (Basic Course Module 7)
How to Use Google Scholar An Educator’s Guide
AP Online Customer Support Help Desk - Kayako EBSC Bratislava Account Payables Customer Support and Invoice Query Resolution Teams.
Making Sense of the Alphabet Soup of Standards
Elsevier Activity Range
Finding Magazine and Journal Articles in
Hi and welcome to the Order Centre – Ordering training.
Source of literature and citation search
….part of the OSU Libraries' suite of digital library tools…
Designing, Implementing, and Benefiting from a Collections Attribution Channel: the view from iDigBio and the ADBC Alex Thompson, Deborah L. Paul, Gil.
Presentation transcript:

Identifying research resources should be easy Anita Bandrowski, UCSD

A system to identify not just who produced a finding, but what produced it Faulty Antibodies Continue to Enter US and European Markets, Warns Top Clinical Chemistry Researcher- Genome Web Daily, October 11, 2013 “…of the findings in the literature about neuronal NF-κB are based on data garnered with antibodies that are not selective for the NF-κB …” --Herkenham et al “…of the findings in the literature about neuronal NF-κB are based on data garnered with antibodies that are not selective for the NF-κB …” --Herkenham et al. 2011

What studies used my monoclonal mouse antibody against actin in humans ? The following antibodies were used for immunoblotting: - actin mAb (1:10,000 dilution, Sigma-Aldrich); -tubulin mAb (1:10,000, Abcam); T46 mAb (specific to tau 404–441, 1:1000, Invitrogen); Tau-5 mAb (human tau 218–225, 1:1000, BD Biosciences) (Porzig et al., 2007); AT8 mAb (phospho-tau Ser199, Ser202, and Thr205, 1:500, Innogenetics); PHF-1 mAb (phospho-tau Ser396 and Ser404, 1:250, gift from P. Davies); 12E8 mAb (phospho-tau Ser262 and Ser356, 1:1000, gift from P. Seubert); NMDA receptors 2A, 2B and 2D goat pAbs (C terminus, 1:1000, Santa Cruz Biotechnology)…

…surely this you have found a terrible paper, this can’t be the norm

Hypothesis: Resources in the published literature are not uniquely identifiable Gather journal articles 5 domains: Immunology Cell biology Neuroscience Developmental biology General biology 5 domains: Immunology Cell biology Neuroscience Developmental biology General biology 3 impact factors: High Medium Low 3 impact factors: High Medium Low 84 Journals 238 papers 707 antibodies 104 cell lines 258 constructs 210 knockdown reagents 437 model organisms Vasilevsky et al, PeerJ, 2013

The problem is general across multiple resource types and disciplines Vasilevsky et al, PeerJ, 2013

Resource Identification Initiative Two pre-meetings with editors and publishers –Society for Neuroscience, 2012 –NIH: June, 2013 –Society for Neuroscience, 2013 Designed pilot project –Entities –Procedure –Infrastructure Established working group through FORCE11 Signed up partners Led by: Matt Brush, Nicole Vasilevsky, Anita Bandrowski and more

Pilot Project Authors to identify 3 types of research resources: –Software/databases –Antibodies –Model organisms Include RRID in methods section Voluntary for authors Journals did not have to modify their submission system Journals have flexibility in implementation. Send request to author at: –Submission –During review –After acceptance Launched February 2014: 3 month commitment and more…

Resource IDs from NIF aggregated databases A single portal for authors >10 databases One search interface Simple directions Prominent “Cite This” button Uniform format for citation across publishers Help desk for authors RII Portal

Current Progress >150 articles have appeared to date 23 journals >650 RRID’s 3 removed by typesetting 95% correct 14% false negative rate thousands of antibodies added from vendors, >200 added by individuals >90 software tools/databases were added to tool registry Database available at: Chemicon – out of business, >8 yr Millipore – just joined Merck, URL still works Millipore / Chemicon not a company Millipore / Chemicon not a company Authors cite ID properly Authors cite ID properly

AntibodiesOrganismsTools Increased identifiability of resources after the Resource Identification Initiative Pilot Update of Vasilevsky et al, PeerJ, 2013

What can we do with an RRID? A resolver service has been created 3rd party tools are being created to provide linkage between resources and papers –Utopia prototype –ScienceDirect Utopia Tools

What have we learned? Authors are willing to adopt new types of citations Authors were fairly accurate at performing the task RRID’s resolved by search engines without requiring specialized citation services Citation drives registration Clear role for repositories as authorities

What Can YOU Do? –Authors: Use IDs in the methods section of next paper. scicrun.ch/resources *it is really easy!* –Reviewers: You are ‘super beings’, use your status to improve the literature! –Antibody Vendors: Register your tools! Make it easy for authors to cite you in a uniform format. Display the “proper citation” format proudly on the tool home page. –Editors: easy to join the RII, download a sample letter from Force11, modify and send to authors. –Central instructions to authors have been updated at Springer and Elsevier, we are working on Wiley. Any help appreciated with others. Questions or Complaints: