Ocean Biogeographic Information System (OBIS) - Outline of the global network and the Australian OBIS Node Tony Rees & Alicja Mosbauer CSIRO Marine & Atmospheric.

Slides:



Advertisements
Similar presentations
16 May 2012 DEA Perspective on Oceans and Coastal Research SANCOR presentation 16 May 2012.
Advertisements

WP3 Biomapping results to date WP3: NRM, CDF, CEFAS, DINARA, WCS Additional input: WP1, AquaMaps workgroup.
Integrating heterogeneous databases in the Ocean Biogeographic Information System Phoebe Y. Zhang J.F. Grassle Rutgers, the State University of New Jersey.
The Discovery Corridor Concept and its Applicability January 13/14, 2004 workshop St. Andrews Biological Station, St. Andrews, N.B.
The Gulf of Maine Biogeographical Information System (GMBIS) Project COD Conference Brussels, 25-27/11/2002 Vardis M. Tsontos Dale A. Kiefer University.
ChEssBase Online database for species from deep-water chemosynthetic ecosystems integrated with OBIS Eva Ramirez-Llodra & Maria Baker National Oceanography.
Integrated Taxonomic Information System Janet Gomon, Deputy Director, ITIS Smithsonian Institution Museum of Natural History The.
OBIS Australia – Regional Node for the Ocean Biogeographic Information System (OBIS) OBIS Australia is an operational component of the Census of Marine.
Corals and sea anemones on line: a functioning biodiversity database D. G. Fautin R. W. Buddemeier University of Kansas: Department of Ecology and Evolutionary.
Next Steps in the Catalogue of Life Frank Bisby, Sp2000 and Thomas Orrell, ITIS Catalogue of Life Partnership.
Ocean Biogeographic Information System Edward Vanden Berghe
MedOBIS Biogeographic Information System for the Eastern Mediterranean and Black Sea funded by: Consortium for Oceanographic Research and Education (CORE)
Mapping Life on Earth: Recent Progress with AquaMaps Rainer Froese IFM-GEOMAR, Kiel, Germany Teldap Conference, Taipei 2 March 2009.
An On-line Atlas of Marine Diversity and a growing inventory of others.
* Chair OBIS International Committee Ocean Biogeographic Information System Evolution and challenges in creating OBIS Mark J.
Development of an Atlantic Canada Marine Biodiversity Information System Based on a Museum Collection: A Case Study Angela J. Martin, Lou Van Guelpen,
Using U.S. and Canadian Atlantic Research Trawl Surveys to Lead Development of a Standards Based Ocean Observing System R. Branton 1, J. Black 1, J. McRuer.
2 nd Data without Boundaries Training Course Bucharest, February 2013.
Physical Oceanography Unit IOI-Malta Operational Centre University of Malta
SeaDataNet, pan-European infrastructure for ocean and marine data management A key component of EMODNet A possible building block for GEOSS By Dick M.A.
Ocean Biogeographic Information System Edward Vanden Berghe.
Ocean Biogeographic Information System. ‘Mission’ OBIS publishes primary data on marine species locations online through –It.
Operational integration of biodiversity and physico-chemical data: experience at the BMDC Meerhaeghe A., De Cauwer K., Devolder M., Jans S., Scory S.
RAPID ASSESSMENT PROGRAM (RAP) Terrestrial Ecosystems Freshwater Ecosystems Marine Ecosystems.
Prepared for the 3rd SBB telecon 20 Mar 2012 Michele Walters, BI-01 task coordinator.
Mark J. Costello & Gerhard Pohle Atlantic Reference Centre Huntsman Marine Science Centre, St Andrews, Canada Ocean Biogeographic Information System (OBIS)
OBIS Portal Architecture Concepts plus potential for utilization as a basis for Regional OBIS Nodes Tony Rees, CSIRO Marine Research, Hobart (and OBIS.
Online Data Flanders Marine Data & Information Centre InnovOcean site SeadataNet Annual Meeting, Madrid 2009.
Using OBIS to Provide Reliable Estimates of Population Indices for Marine Species from Research Trawl Surveys Ocean Biodiversity Informatics Conference.
1 Bureau of Ocean Energy Management Assessing Historic Properties and Cultural Resources in the Main Hawaiian Islands Dave Ball, MA, RPA Pacific Region.
Oceans Portal Workshop 30 th March 2004 Healthy oceans: cared for, understood and used wisely for the benefit of all, now and in the future healthy oceans:
1 Electronic Atlas for All Marine Species Rainer Froese IFM-GEOMAR
Zope/Plone/Python for Research Ben Best OBISSEAMAP mapping marine megavertebrates
National Workshop on ANSN Capacity Building IT modules OAP, Thailand 25 th – 27 th June 2013 KUNJEER Sameer B Briefing on centralized ANSN website.
Unexpected Mega-Users of ICES Data Rainer Froese Leibniz Institute of Marine Sciences Kiel, Germany.
Knowledge base for growth and innovation in ocean economy: assembly and dissemination of marine data for seabed mapping LOT NO: 5 – BIOLOGY Simon Claus.
IODE Ocean Data Portal – from data access to integration platform Sergey Belov, Tobias Spears, Nikolai Mikhailov International Oceanographic Data and Information.
Using the Global Change Master Directory (GCMD) to Promote and Discover ESIP Data, Services, and Climate Visualizations Presented by GCMD Staff January.
The Marine S ystème d’ I nformation sur la N ature et les P aysages CAML Workshop– Villefranche-sur-mer – 18 th May 2010.
Managed by UT-Battelle for the Department of Energy Mercury – Distributed Metadata Tool for Finding and Retrieving CDIAC Data CDIAC UWG Meeting September.
Discovery Tools for Health Libraries  11 th September 2015 WorldCat Discovery Services Simon Day Product Manager.
Development of a Marine Biological Data Portal within the framework of EMODNet Simon Claus, Leen Vandepitte and Tjess Hernandez Flanders Marine Institute.
GBIF Data Access and Database Interoperability 2003 Work Programme Overview Donald Hobern, GBIF Programme Officer for Data Access and Database Interoperability.
1 The National Biological Information Infrastructure and Biodiversity Collections Annette Olson BCI meeting, Washington DC, January 28-29th, 2008.
Fábio Lang da Silveira – This talk on behalf of OBIS International Committee and OBIS North & South America Nodes USP – Zoology.
CPPS’s opportunities in the context off an Integrated Regional Ocean Policy Patricio A. Bernal PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE.
Ocean Biogeographic Information System Edward Vanden Berghe.
Hellenic Centre for Marine Research (HCMR) MedOBIS - Ocean Biogeographic Information System for the Eastern Mediterranean and Black Sea.
BIOLOGICAL OCEANOGRAPHY and MARINE BIOLOGY Daphne G. Fautin Ecology and Evolutionary Biology and KU Natural History Museum and Biodiversity Research Center.
Coastal Marine Ecological Classification Standard (CMECS) and the Ecosystem Thematic Network (ETN) Christopher J. Madden NatureServe March 2008.
1 1 NOAA Office of Ocean Exploration End-to-End Data Management: A Success Story NOAA Tech Conference November 2005 Susan Gottfried National Coastal Data.
1 EMODNET pilot biological lot Francisco Hernandez, Simon Claus, Leen Vandepitte.
International Oceanographic Data and Information Exchange - Ocean Data Portal (IODE ODP) Enabling science through seamless and open access to marine data.
System concept and development by: Tony Rees Divisional Data Centre CSIRO Marine Research, Australia c-squares - a new method for representing, querying,
The Admiralty Bay Benthos Biodiversity Database - ABBED.
Future needs and plans for ocean observing in the Arctic AOOS Arctic Town Hall Futur Zdenka Willis Integrated Ocean Observing System National Program Office.
National Oceanographic Data Center of Ukraine (Marine Biology) LaMIS, IBSS NAS Ukraine Results of work (October 2009 – October 2010) 3-d meeting of the.
African Register of Marine Species AfReMas Leen Vandepitte On behalf of WoRMS data management team.
OBIS - A Valuable Resource for NW Atlantic Fisheries Science (Part 2) OBIS Canada M.Kennedy, B.Marshall, N.Campbell, W.Appeltans NAFO Scientific Council.
ODINAfrica Marine Biodiversity Data Management training course Ward Appeltans UNESCO, Intergovernmental Oceanographic Commission (IOC-UNESCO) International.
An initiative of the ACZISC Supporting Integrated Coastal and Ocean Management (ICOM)
NATIONAL INSTITUTE OF OCEANOGRAPHY SYED IMTIAZ ALI NATIONAL INSTITUTE OF OCEANOGRAPHY PAKISTAN.
1 AGENDA: Coordination Board Meeting EMODnet BIOLOGICAL LOT 11/10/2010.
Metadata standards Leen Vandepitte On behalf of WoRMS data management team.
Agree on deployment, UNEP Live – uneplive.unep.org.
COINAtlantic Expanding OBIS Canada partnerships and Visualizing OBIS Canada IPT Resources SG-OBIS-V May 25 – 27, 2016 UNESCO/IOC Project Office for IODE.
Flanders Marine Institute (VLIZ)
Becoming an OBIS Node.
Ocean Biogeographic Information System (OBIS)
Metadata = data about the data
Presentation transcript:

Ocean Biogeographic Information System (OBIS) - Outline of the global network and the Australian OBIS Node Tony Rees & Alicja Mosbauer CSIRO Marine & Atmospheric Research (CMAR) and National Oceans Office (NOO) 13 July 2005

OBIS Outline – July 2005 What is OBIS? OBIS – the Ocean Biogeographic Information System  Single access point for distribution records for marine species from multiple sources over the internet, with onward access to analytical tools and maps  Designated role as the data and information management component of the Census of Marine Life  Currently accessed from a central OBIS Portal at Rutgers University, USA (

OBIS Outline – July 2005 Where does OBIS data come from? (8 databases in 2002, 46 as at June 2005, total 5m records so far...) Key to numbered contributing databases: 1: BATS Zooplankton 2: Hexacorals Database 3: CephBase 4: DFO Scotian Summer Research Trawl Survey 5: FishBase 7: History of Marine Animals (HMAP) 8: Indo-Pacific Mollusks 9: NODC WOD01 Plankton Database (NODC) 10: SeamountsOnline 11: ZooGene 12: Southampton Oceanography Center Discovery Collections Midwater Database (SOC) 13: OBIS-SEAMAP 14: AADC_seabirds 15: AADC_ellie_sightings_heard 16: AADC_weddell_census 17: AADC_weddell_sightings 19: SAHFOS_CPR_ZOOPLANKTON 20: SAHFOS_CPR_PHYTOPLANKTON 21: AADC_herbarium 22: AADC_whale_catch 23: Taxonomic Information System for the Belgian coastal area (EUROBIS) 24: Generic Taxonomical Database System 25: EPA's EMAP Database 26: NBI 27: Ifremer BIOCEAN database (Deep Sea Benthic Fauna) 28: Eastern Canada Benthic Macro Fauna (Canadian Regional Node) 29: Atlantic Reference Centre (Canadian Regional Node) 30: Electronic Atlas of Ichthyoplankton on the Scotian Shelf of North America (Canadian Regional Node) 31: Gwaii Haanas Marine Plants (Canadian Regional Node) 32: Canadian Museum of Nature - Fish Collection (Canadian Regional Node) 33: Atlantic Canada Conservation Data Centre (Canadian Regional Node) 34: Nova Scotia Museum of Natural History - Marine Birds, Mammals, and Fishes (Canadian Regional Node) 35: Gwaii Haanas Invertebrates (Canadian Regional Node) 36: Bay of Fundy Species List (Canadian Regional Node) 37: Marine Invertebrate Diversity Initiative (Canadian Regional Node) 38: ECNASAP (Canadian Regional Node) 39: Resolute Passage Copepod Distribution 40: Benthic fauna in the Pechora Sea (EUROBIS) 41: Temporal cover of N3, a station in Kiel bay (EUROBIS) 42: MedOBIS (EUROBIS) 44: Biogeography Scheldt Estuary (EUROBIS) 45: Macrobel: Long term trends in the macrobenthos of the Belgian Continental Shelf (EUROBIS) 46: Meiobenthos of subtidal sandbanks on the Belgian Continental Shelf (EUROBIS) 47: BioMar (EUROBIS) 48: The SERTC Invertebrate Database: Invertebrates of the southeastern United States 49: Grand Manan Basin Benthos

OBIS Outline – July 2005 Value of OBIS to the data user...  User can browse to see what distribution data are currently available (via the OBIS network) on any marine species  OBIS system does the work of interconnecting the remote data sources, user does not need to know in advance where the data reside or worry about formats, permissions, etc.  OBIS will:  preview the data as “quick maps”  download the data to the user’s browser  provide access to online mapping / modelling tools (an area for future expansion)

OBIS Outline – July 2005 Value of OBIS to the data provider...  OBIS will expose your data to the world (if that is what you want)  OBIS permits seamless integration of your data with that from other providers (build synoptic datasets for the first time – cf. common practice in oceanographic research)  Access to OBIS tools is a degree of “value adding” – expected to become more significant through time  OBIS provides data standards, formatting advice, etc. (cooperative development environment)

OBIS Outline – July 2005 Example OBIS data search – Balaenoptera (a whale genus)

OBIS Outline – July 2005 Example OBIS data search – min. 0 records, max. 43,000 records per species (in this case)

OBIS Outline – July 2005 “Quick map” shows data integration from 5 sources (in this instance)...

OBIS Outline – July 2005 “Get OBIS Data” downloads the records to the user’s browser

OBIS Outline – July 2005 Current range of OBIS tools  “Community development” model allows members of the OBIS community (or others) to contribute new tools as available

OBIS Outline – July 2005 New for 2005 – Regional OBIS Nodes  8 Regional OBIS Nodes (RONs) to be established in , 5 in S. hemisphere (Australia, New Zealand, India, Sub- Saharan Africa, S. America)  Australian node will take lead in “region of interest” – e.g. including surrounding oceans  A key role of a RON is to promote and assist the flow of regional data into the OBIS system (fill “gaps on the map”)  Our interest is to provide a regional perspective (e.g. Australia- specific context and other content / tools) as well as a source of expertise to bring Australian content providers online

OBIS Outline – July 2005 Australia’s Regional OBIS Node  National Oceans Office and CMAR are co-sponsoring the Australian Regional OBIS Node (RON) – website  Initial activity will be serving up 0.25m CMAR records (research survey data) as an example dataset  Australian node staff will be available to assist potential data providers to either:  connect their data directly to the master OBIS system, or  provide copies of data to the RON to be hosted and served on their behalf (keeping identity of the original provider)  Node staff will also be investigating ways to add value to the Australian content e.g. by making environmental overlays, etc. specific to the Australian region.

OBIS Outline – July 2005 Further information  Visit the Australian OBIS Node website (  Contact the Australian RON Manager: Thank you!