Analysis of p53 codon 72 gene polymorphism in Isfahanian patients with endometriosis Dr. Mehdi Nikbakht Dastjerdi (PhD) Associate professor, Department.

Slides:



Advertisements
Similar presentations
Research Techniques Made Simple: Polymerase Chain Reaction
Advertisements

Diagnosis with PCR This is a preparation of DNA. We zoomed in a portion of a gene. We know that two primers, Forward and Reverse, will hybridize at specific.
Module 12 Human DNA Fingerprinting and Population Genetics p 2 + 2pq + q 2 = 1.
Molecular LDT in Newborn Screening Laboratories
Endometriosis and Cancer…Is there a Causal Link? Paula Payton Masters Project 2/22/06 Advisor: Prof Eileen VanDyke.
By Angela Brooks and David Chapman Mentor: Dr. Garry Larson Molecular Medicine, City Of Hope Southern California Bioinformatics Institute 2004.
Conclusions Human Leukocytes Antigen (HLA) Association with Brain Astrocytic Tumors Detected by Genomic DNA Typing Ammira Al-Shabeeb University of Sydney.
Alzheimer’s Disease SHOTS PROGRAM 2008 Tyree’ Barnes Dioval Remonde “How soon will YOU forget?” NC A&T University Greensboro, NC Department of Biology.
Definition of PCR Requirements for PCR PCR Process Agarose gel electrophoresis.
 The HIV virus can mutate in HIV positive patients taking Anti-Retroviral Therapy (ART)  Their HIV strain has now become drug resistant (DR), and their.
Genetic Alterations of TP53 Gene in Brain Astrocytic Tumours Methodology Θ Eighty-three brain tumor biopsies were collected and used in this study. Thirty.
GENETIC FINGERPRINT ESTABLISHED FOR THE SELECTED ALFALFA GENOTYPES USING MOLECULAR MARKERS.
Division of Neurophysiology Frank Lehmann-Horn, Senior Research Professor Periodic Paralysis Association Orlando, 2011 Overview of Periodic Paralysis Genetic.
Promoter polymorphism of macrophage Migration Inhibitory Factor (MIF) gene in Czech and Russian patients with myocardial infarction Promoter polymorphism.
FEMALE REPRODUCTIVE SYSTEM (Pre and Post)
Single Nucleotide Polymorphisms Mrs. Stewart Medical Interventions Central Magnet School.
LOH ANALYSES IN THE REGION OF THE PUTATIVE TUMOR SUPPRESSOR GENE C13 ON CHROMOSOME 13 U. Fiedler, W. Ehlers, Jana Herrmann, Jörg Stade and M. P. Wirth.
Manipulation of DNA. Restriction enzymes are used to cut DNA into smaller fragments. Different restriction enzymes recognize and cut different DNA sequences.
Visualizing DNA. What is it?  Gel electrophoresis is one of the techniques scientists use to look at the DNA they have.  This technique separates DNA.
Two RANTES gene polymorphisms and their haplotypes in patients with myocardial infarction from two Slavonic populations Two RANTES gene polymorphisms and.
Using a Single Nucleotide Polymorphism to Predict Bitter Tasting Ability Lab Overview.
Association of functional polymorphisms of Bax and Bcl2 genes with schizophrenia Kristina Pirumya, PhD, Laboratory of Human Genomics and Immunomics Institute.
Using a Single Nucleotide Polymorphism to Predict Bitter Tasting Ability Lab Overview.
Prevalence of Cytochrome p450 CYP2C9*2 and CYP2C9*3 in the York Hospital Blood Bank. Andy Ngo Department of Biological Sciences, York College Introduction.
© 2013 Pearson Education, Inc. Extensions of Mendelian Genetics  Incomplete Dominance is when a heterozygote expresses a phenotype intermediate between.
PUC 19 5’ 3’ 5’ 3’ 5’ 3’ 5’ 3’ PCR -I pUC 19 specific primers Amplicon purification PCR -II 5’ 3’ 5’ 3’ 5’ 3’ 5’ 3’ 5’ 3’ 5’ 3’ Composite pUC 19 primers.
GENETIC MARKERS OF CORONARY ARTERY DISEASE RISK GALYA ATANASOVA MD, PhD DOMINIC JAMES.
INTERPRETING GENETIC MUTATIONAL DATA FOR CLINICAL ONCOLOGY Ben Ho Park, M.D., Ph.D. Associate Professor of Oncology Johns Hopkins University May 2014.
PREVALENCE AND CHARACTERIZATION OF MRSA IN A REGIONAL HOSPITAL IN CUENCA, ECUADOR Student Researchers: Annie Szmanda and Erin Leisen Faculty Researcher:
Date of download: 6/24/2016 Copyright © 2016 American Medical Association. All rights reserved. From: Interleukin 6 and Interleukin 8 as Potential Biomarkers.
Correlation of Glu298Asp eNOS Polymorphism with Serum NO Levels in Egyptian Coronary Artery Disease Patients Sahar Abdel-Maksoud, Sally Ibrahim, Feeby.
Conclusions: Results : Methods: We prospectively recruited 50 women with recurrent pregnancy loss mean age 33.0 (±5.4) years and 30 healthy controls mean.
 No association was found between PTPN C/T polymorphism and T1DM susceptibility.  The frequency of T allele was 3% in T1DM patients, while T allele.
What is “Bioinformatics”?
Research Techniques Made Simple: Polymerase Chain Reaction
Absence of association between IL-28B gene polymorphism (rs SNP) and sustained virological response in Iranian patients with chronic Hepatitis.
Figure 1. RT–PCR identification of an abnormal transcript of the PTPN6 gene in normal and leukemic bone marrow cells and cell line. (a) Diagrammatic representation.
Crystiana Tsujiura (’14) and Judy L. Stone
Duration of symptoms (years)
One method of rapidly analyzing and comparing DNA is gel electrophoresis. Gel electrophoresis separates macromolecules - nucleic acids or proteins - on.
Molecular Approaches for Screening of Genetic Diseases
27-29 September 2016 in Sanandaj, Kurdistan, Iran.
by Karen Reue, Robert D. Cohen, and Michael C. Schotz
mHealth for Chronic Disease:
Relationship between Genotype and Phenotype
Rachel Bautzmann, Mentor: Dr
Single Nucleotide Polymorphisms
Relationship between Genotype and Phenotype
Genetic testing for high-risk colon cancer patients1
Hou-Sung Jung, Gregory J. Tsongalis, Joel A. Lefferts 
Specific Detection of Cytokeratin 20-Positive Cells in Blood of Colorectal and Breast Cancer Patients by a High Sensitivity Real-Time Reverse Transcriptase-Polymerase.
Toward a Survey of Somatic Mutation of the NF1 Gene in Benign Neurofibromas of Patients with Neurofibromatosis Type 1  Ingrid Eisenbarth, Kim Beyer, Winfrid.
Investigation of the human stem cell factor KIT ligand gene, KITLG, in women with 46,XX spontaneous premature ovarian failure  Emily S. Hui, B.A., Ekemini.
Analysis of an exon 1 polymorphism of the B2 bradykinin receptor gene and its transcript in normal subjects and patients with C1 inhibitor deficiency 
Trinucleotide (CAG) repeat polymorphisms in the androgen receptor gene: molecular markers of risk for male infertility  Amparo Mifsud, B.Sc., Chris K.S.
Ala16Val SOD2 polymorphism is associated with higher pregnancy rates in in vitro fertilization cycles  José Ignacio Ruiz-Sanz, Ph.D., Igor Aurrekoetxea,
Long-Range Polymerase Chain Reaction for Specific Full-Length Amplification of the Human Keratin 14 Gene and Novel Keratin 14 Mutations in Epidermolysis.
Identification of a genetic variant associated with abdominal aortic aneurysms on chromosome 3p12.3 by genome wide association  James R. Elmore, MD, Melissa.
Amplification Refractory Mutation System, a Highly Sensitive and Simple Polymerase Chain Reaction Assay, for the Detection of JAK2 V617F Mutation in Chronic.
Characterization and mutation analysis of the human FORMIN-2 (FMN2) gene in women with unexplained infertility  David A. Ryley, M.D., Hsin-Hung Wu, M.D.,
DNA Profiling Vocabulary
Hélio Sato, M. D. , Ph. D. , Naiara C. Nogueira-de-Souza, M. Sc. , Ph
Wook Lew  Journal of Investigative Dermatology 
Analytical Evaluation of Primer Engineered Multiplex Polymerase Chain Reaction– Restriction Fragment Length Polymorphism for Detection of Factor V Leiden.
Polymorphism T→C (−34 bp) of gene CYP17 promoter in Greek patients with polycystic ovary syndrome  Evanthia Diamanti-Kandarakis, M.D., Ph.D., Michael.
Lin Mu, Ph. D. , Wei Zheng, Ph. D. , M. D. , Liang Wang, Ph. D
Preimplantation genetic diagnosis for the Kell genotype
Maureen J. O'Sullivan, Peter A. Humphrey, Louis P. Dehner, John D
Research Techniques Made Simple: Polymerase Chain Reaction
Exon Skipping in IVD RNA Processing in Isovaleric Acidemia Caused by Point Mutations in the Coding Region of the IVD Gene  Jerry Vockley, Peter K. Rogan,
Presentation transcript:

Analysis of p53 codon 72 gene polymorphism in Isfahanian patients with endometriosis Dr. Mehdi Nikbakht Dastjerdi (PhD) Associate professor, Department of Anatomical Sciences and Molecular Biology,Faculty of Medicine, Isfahan University of Medical Sciences Bahram Eslami Farsani(MSc) Senior Student, Faculty of Medicine, Isfahan University of Medical Sciences.Roshanak Abutorabi(PhD ) Associate professor, Department of Anatomical Sciences and Molecular Biology,Faculty of Medicine, Isfahan University of Medical Sciences MethodsObjectivesResults Conclusions References The ages of samples were between years old To analyze the codon 72 polymorphism, we used a PCR-based assay that specifically, amplify either TP53 Pro or TP53 Arg allele and give a PCR product by using specific primers for Arg allele (Figure 1) and/or Pro allele (Figure 2) respectively. Detection of TP53 codon 72 polymorphism by allele specific PCR was successfully conducted in all cases and controls. The distribution of the three different genotypes of codon 72 in exon 4 of TP53 in our cases and controls is shown in table 1.. In this study, polymorphism of codon72 TP53 gene has been studied among 90 patients suffering endometriosis and 90 blood samples from normal people as control group. Different genotype of codon72 exon4 TP53 gene was determined by using allele specific polymerase chain reaction. the TP53 codon 72 Pro allele were detected by PCR using the primer pair p53Pro+/ p53Pro- (p53Pro+: 5′- GCCAGAGGCTGCTCCCCC; and P53Pro-: 5′-CGTGCAAGTCACAGACTT) and the p53 codon 72Arg allele by the primer pair p53Arg+/p53Arg-(p53Arg+: 5′- TCCCCCTTGCCGTCCCAA andp53Arg-: 5′CTGGTGCAGGGGCCACGC). The amplified products were subjected to electrophoresis on 1% agarose gel in 1× TBE buffer andvisualized on a transilluminator using ethidium bromide. Obtained information via software SPSS have been analyzed. For comparing the frequency distribution of three different genotype of codon 72 in endometriosis samples with that of control ones Chi- Square Test has been used. P-value lowers than 0.05% is considered meaningful. Endometriosis is one of prevalent disease among women and has the same features of malignant tumors and its cause is not clear. Almost 10% women suffer this disease and nearly 18% women suffer during pregnancy age.This ratio reaches to nearly 30 to 40 % in infertile women.Endometriosis has been occurred by growing endometrial tissues outside the uterus and causes the abnormalities like painful sexual intercourse, painful menstruation and pelvic pains and infertility Picture (1). Electrophoresis for Arginine allele Picture (2). Electrophoresis gene for Proline allele Genotyp e EndometriosisControl group NumberPercentNumberPercent Arg/Arg Pro/Pro Arg/Pro Table(1). Genotypic frequency distribution in control and endometriosis group This study shows that genotype Pro/Pro codon72 exon4 P53 gene may be a predisposing genetic factor for endometriosis in Esfahan.