Reproducible Enzyme Assembly and Catalytic Activity in Reusable BioMEMS Rubloff Research Group Accomplishments.

Slides:



Advertisements
Similar presentations
Enzymes What are enzymes?
Advertisements

Chapter 4 - Enzymes and Energy Most enzymes are proteins with diverse structure. Enzymes are chemical catalysts that: –Increase the rate of a reaction.
Enzyme Phosphorylation
Enzymes and Metabolism Chapter 4 Chemical Reactions First Law of Thermodynamics –Matter and energy cannot be created or destroyed, but can be converted.
Enzyme Kinetic Zhi Hui.
Fabrication of a Microelectrode Array Biosensor Based on a Modified Enzyme-Chitosan Biocomposite Lorenzo D’Amico October 1, 2008.
Determination of Partition Coefficient of NAD + on Nafion 117 membranes Importance: Partitioning process affects actual NAD + and NADH concentrations,
Non Specific Binding (NSB) in Antigen-Antibody Assays Chem 395 Spring 2007 Instructor : Dr. James Rusling Presenter : Bhaskara V. Chikkaveeraiah.
Chapter 6: Energy, Enzymes, and Metabolism CHAPTER 6 Energy, Enzymes, and Metabolism Life: the Science of Biology, Purves 6 th ed.
Determining Reaction Rate and Order of Reaction An example of Using the Excel Solver function by: Vanadium Sigma.
TRACE METALS - FROM DEFICIENCY TO TOXICITY Quest – July 22, 2004 Yeala Shaked, Yan Xu and Francois Morel, Geosciences Dept, Ecology and Evolutionary Biology.
Enzymes Have properties shared by all catalysts Enhance the rates of both forward and reverse reactions so equilibrium is achieved more rapidly Position.
Lecture 7 Reactions and Enzymes. Chemical Reactions in a Cell The Terminology The sum total of all the chemical conversions in a cell is called metabolism.
Micro-Fluidic Device for Antigen Discovery
CELL RESPIRATION Introduction to cell respiration laboratory
ENZYMES.
Metabolic Reactions Enzymology Catabolism Litho/Phototrophy Anabolism Microbial Metabolism.
ATWARM Advanced Technologies for Water Resource Management Marie Curie Initial Training Network Next Generation Autonomous Analytical Platforms for Remote.
Biological Oscillations Using the Goodwin Oscillator as a model of negative feedback J. Watrous Biology Department St. Joseph’s University July, 2008.
Chemical Reactions and Enzymes. Energy and Matter Energy The ability to do work or cause change Occurs in various forms Can be converted to another form.
Western Blotting.
Biochemical Reactions Chemistry in Biology Chapter 6.
Fundamentals of Biochemistry Third Edition Fundamentals of Biochemistry Third Edition Chapter 11 Enzymatic Catalysis Chapter 11 Enzymatic Catalysis Copyright.
Overview of Kinetics Rate of reaction M/sec Rate constant sec -1, M -1 sec -1 Conc. of reactant(s ) Velocity of reaction 1 st order reaction-rate depends.
Advisor : Ru-Li Lin Advisee :Shih-Min Chen Southern Taiwan University of Science and Technology, Department of Mechanical Engineering, Tainan, TAIWAN Date.
Unit 1: pH Introduction to Biology and Basic Chemistry within Biology.
Metabolic Reactions Enzymology Catabolism Phototrophy Anabolism Microbial Metabolism.
Instrumented NanoPhysiometer for High Throughput Drug Screening D. Michael Ackermann, Jon Payne, Hilary Samples, James Wells.
Why study enzyme kinetics?  To quantitate enzyme characteristics  define substrate and inhibitor affinities  define maximum catalytic rates  Describe.
 I can describe the structure and explain the significance and functions of enzymes in biological systems › I can describe why an investment of activation.
Forms of Energy Energy is the capacity to cause change Energy exists in various forms, some of which can perform work Kinetic energy is energy associated.
Regulation of enzyme activity Lecture 6 Dr. Mona A. R.
U.S. Department of the Interior U.S. Geological Survey End-Member Mixing Analysis Applied to the Karstic Madison Aquifer Using Water Chemistry in the Southern.
Six classes of enzymes.
An Introduction to Metabolism.  Metabolism = Catabolism + Anabolism  Catabolic reactions are energy yielding They are involved in the breakdown of more-
Progress Report on Miniaturized Liquid Chromatography for NeSSI
A Wireless Bio-MEMS Sensor for C-Reactive Protein/ECG Detection Based on Nanomechanics Long-Sun Huang and Shey-shi Lu Y. H. Wang* and N. K. Chou* National.
BioMEMS Device Integration, Packaging and Control for BioMEMS
Biochemical instrumental analysis - 12 Dr. Maha Al-Sedik 2015 CLS 332.
DNA Science. Restriction Digest Restriction Digestion is the process of cutting DNA molecules into smaller pieces with special enzymes called Restriction.
BIOFABRICATION OF MEA GLUCOSE SENSORS Dry in air Ready for in vitro glucose detection (B) Chitosan biopolymer is electrodeposited on target electrode sites;
Development of a Signaling Pathway Map for the FXM Gil Sambrano, Lily Jiang, Madhu Natarajan, Alex Gilman, Adam Arkin University of California San Francisco,
Agenda Collect Pre-lab #6 Lab Quiz #5 Paper Assignment due
Chemistry of Life Chapter 2. All Living Things Use Energy Energy in living things is converted from 1 form to another (chemical-physical-thermal etc.)
Integrated Microfluidic Systems for Automatic Glucose Sensing and Insulin Injection 1 Chao-June Huang, 2 Chih-Hao Wang, 3 Yi-Hsin Chen, 3 Tse-Chuan Chou.
Chemistry in Biology  The activation energy is the minimum amount of energy needed for reactants to form products in a chemical reaction.  Exothermic.
Development of Microfluidic Glucose Sensors BME 273: Kristen Jevsevar, Jason McGill, Sean Mercado, Rebecca Tarrant Advisors: Jennifer Merritt, Dr. John.
Multilayer Microfluidics ENMA490 Fall 2003 Brought to you by: S. Beatty, C. Brooks, S. Dean, M. Hanna, D. Janiak, C. Kung, J. Ni, B. Sadowski, A. Samuel,
Enzyme Linked Immunosorbent Assay
Metabolic pathways. What do we mean by metabolism? Metabolism is the collective term for the thousands of biochemical _________ that occur within a living.
Chapter 6 Energy Flow in the Life of a Cell Chapter 6 Energy Flow in the Life of a Cell.
Mathematical Simulations of Heat Transfer and Fluid Dynamics in a Microfluidic Calorimeter with Integrated Thin-film Thermopiles G. G. Nestorova 1, Niel.
Synthesis and Evaluation of anti-Nonspecific Binding Coating in Microfluidic Devices for ELISA Bioassays Melissa J. Gelwicks.
A non-amplification molecular probe approach John Gerdes, Ph. D.
Multiplexed Point-of-Care Testing – xPOCT
Microtechnologies for biodetection and diagnostics
Microfluidic Biochips
Enzymes.
Figure 3 Single-cell analysis of antimicrobial susceptibility
Microfluidic Compartmentalized Directed Evolution
Do Now Take out your: Vocabulary notes + Toothpickase lab
Semen analysis: looking for an upgrade in class
Fig. 1 Digital microfluidic cartridge and ELISA used for measles and rubella testing. Digital microfluidic cartridge and ELISA used for measles and rubella.
Fig. 2 Fluidic and electrical characteristics of the wireless optofluidic system. Fluidic and electrical characteristics of the wireless optofluidic system.
Biomimetic Thioesters as Probes for Enzymatic Assembly Lines: Synthesis, Applications, and Challenges  Jakob Franke, Christian Hertweck  Cell Chemical.
DNA conjugation and reversibility on chitosan surfaces
Electrochemical Synthesis of Metabolites, Degradants, Reference Materials ASMS 2018 San Diego, CA, USA.
Fig. 1. Overview of the dongle.
Multiplexed Point-of-Care Testing – xPOCT
Presentation transcript:

Reproducible Enzyme Assembly and Catalytic Activity in Reusable BioMEMS Rubloff Research Group Accomplishments

Reproducible Enzyme Assembly and Catalytic Activity in Reusable BioMEMS Accomplishment Pro-tagged Pfs enzymes are spatially assembled in microfluidic channels with biochemical assembly strategy mediated by chitosan Enzymatic reaction products are collected and conversion substrate SAH is analyzed with HPLC Significance Simple, robust and covalent enzyme assembly in the post-fabricated microfluidic environment Enzyme assembly under mild aqueous conditions with spatial and temporal programmability and orientational control Assembled enzyme exhibits enzymatic activity, assembly reversibility and stability over extended periods of time. People involved Xiaolong Luo, Angela Lewandowski, Bill Bentley, Gary Rubloff Collaboration with Hyunmin Yi, Gregory F. Payne and Reza Ghodssi Links SAH Enzymatic reaction SRH + Adenine Flow

Enzyme Assembly and Enzymatic Reaction in Microfluidic Publications X. L. Luo, A. T. Lewandowski, H. M. Yi, R. Ghodssi, G. F. Payne, W. E. Bentley and G. W. Rubloff, “Reproducible Assembly and Catalytic Activity of a Metabolic Pathway Enzyme in Reusable BioMEMS Devices ”, Lab on a Chip, Submitted. X. L. Luo, J. J. Park, H. Yi, A. T. Lewandowski, W. E. Bentley, G. F. Payne, R. Ghodssi, and G. W. Rubloff, "Chitosan-mediated Enzyme Assembly toward Rebuilding a Metabolic Pathway in the Microfluidic Environment," Materials Research Society 2007 Spring Meeting, San Francisco, CA, April 9-13, J. J. Park, X. L. Luo, H. Yi, R. Ghodssi, and G.W. Rubloff, “In situ Biomolecule Assembly and Activity within Completely Packaged Microfluidic Devices”, IEEE/NLM Life Science Systems and Applications Workshop, Bethesda, MD, July 13-14, 2006.In situ Biomolecule Assembly and Activity within Completely Packaged Microfluidic Devices Presentations X. L. Luo, A. T. Lewandowski, G. F. Payne, R. Ghodssi, W. E. Bentley, and G. W. Rubloff, "Enzyme Assembly and Catalytic Activity in a Reusable BioMEMS Plateform for Metabolic Engineering", Proceedings of the 11th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS), Paris, France, October 7-11, X. L. Luo, J. J. Park, H. Yi, A. T. Lewandowski, W. E. Bentley, G. F. Payne, R. Ghodssi, and G. W. Rubloff, "Chitosan-mediated Enzyme Assembly toward Rebuilding a Metabolic Pathway in the Microfluidic Environment," Materials Research Society 2007 Spring Meeting, San Francisco, CA, April 9-13, X. L. Luo, J. J. Park, H. Yi, R. Ghodssi, G. W. Rubloff, "Biomolecule Assembly and Functionality in Completely Packaged Microfluidic Devices," American Vacuum Society 53rd International Symposium, San Francisco, CA, November 12-17, J. J. Park, X. L. Luo, H. Yi, R. Ghodssi, and G.W. Rubloff, “In situ Biomolecule Assembly and Activity within Completely Packaged Microfluidic Devices”, IEEE/NLM Life Science Systems and Applications Workshop, Bethesda, MD, July 13-14, 2006.In situ Biomolecule Assembly and Activity within Completely Packaged Microfluidic Devices

Our Vision— Metabolic Pathway in Microfluidics

Reproducible Enzyme Assembly in Reusable BioMEMS 1.Reproducible assembly of a bio-catalytically active enzyme is achieved in a reusable bioMEMS. 2.Assembly is based on covalent conjugation of enzyme followed by electrodeposition of the conjugate onto electrodes in microfluidic channels. 3.The assembled conjugate can be removed by a mild acid wash without harming the bioMEMS.

(a) Fluidic I/O Electric I/O Channel Electrode (b) Water, PBS, Chitosan …… PC with LabView Flow Control Electric signal Control Valve Micropump Fluid flow Counter electrode Chitosan Power supply Valve Products or waste waste (c) BioMEMS and Control System

Enzyme Assembly and Catalytic Activity Pfs enzyme was assembled (day 1), removed by acid (day 3) and re-assembled (day 3). Substrate SAH was introduced after enzyme was assembled (day 2), removed (day 3), re- assembled (day 4) and left in PBS buffer for 4 days (day 8). The background colors in each step in (a) correspond to the background colors in (b) and (c). (a) Experimental process. (b) Schematic flow of enzymatic reactions. (c) % conversion (red square) vs. flow rate (black line). Day 2 Day 3 Day 4 Day 8 After Pfs assembly After acid wash After Pfs re-assembly After 4 days in PBS SAH (b) (a) In PBS (4 days) Re-assembly Acid wash (10 min) Time (hour) (c) ConversionFlow rate

Negative control to determine Pfs non- specific binding within microfluidic channel. Pfs was introduced into microfluidic channel without the activating enzyme tyrosinase and without chitosan. Conversion Flow rate SAH After Pfs non-specific assembly Analysis of enzyme tability after 4 days in PBS buffer The transient concentration response at sample collection point to the concentration change at reaction site. 3  L/min 22  L/min Enzyme Assembly and Catalytic Activity