Detection of Arthropod-Borne Pathogens Using PCR Techniques Melissa Miller Entomologist US Army Center for Health Promotion & Preventive Medicine, Fort.

Slides:



Advertisements
Similar presentations
Practical molecular biology
Advertisements

Biology Mathematics Engineering Optics Physics Robotics Informatics.
Fundamental in Real Time PCR
Oligonucleotides – Primers and Probes by … as quality counts! Competence and Service in Molecular Biology metabion´s history.
Tools for Molecular Biology Amplification. The PCR reaction is a way to quickly drive the exponential amplification of a small piece of DNA. PCR is a.
The Lightcycler. Carousel with capacity for 32 samples.
Real-Time PCR mRNA quantification. What do mRNA levels tell us? DNA  mRNA  protein Reflect level of gene expression Information about cell response.
Biotechnology and Recombinant DNA
Copyright © 2004 Pearson Education, Inc., publishing as Benjamin Cummings PowerPoint ® Lecture Slide Presentation prepared by Christine L. Case Microbiology.
PCR quantitative en temps réel Lydie Pradel. PCR.
Introduction to Tickborne Diseases
What Can You Do With qPCR?
Real Time PCR as a Diagnostic Tool. PCR = Polymerase Chain Reaction A way to make lots of copies of DNA What Happens in the Machine? Do the PCR virtual.
Q-PCR Bige Vardar
Tecniche di amplificazione quantitative, Real-Time PCR Mauro Pistello Dipartimento Patologia Sperimentale Università di Pisa.
Dr. Soupsana P. Katerina Ioannina, 5/7/13. What is Real-time PCR? Real-time PCR is the continuous collection of fluorescent signal from one or more polymerase.
COBAS AmpliPrep/Cobas TaqMan HIV-1 Test
Molecular methods for molluscan diseases and marine fish virus (VNN)
Real-Time Quantitative RT-PCR
DNA-based Methods for Quantifying Microbes in Atmospheric Samples Tom Hill, Helen Ahern and Bruce Moffett University of East London.
© 2006 W.W. Norton & Company, Inc. DISCOVER BIOLOGY 3/e 1 Manipulation of DNA Selective breeding has manipulated DNA f/ eons  Domesticated animals demonstrate.
© Copyright 2009 by the American Association for Clinical Chemistry Mediator Probe PCR: A Novel Approach for Detection of Real-Time PCR Based on Label-Free.
Quantification of RNA by real-time PCR
Genetics Techniques: RFLP & PCR AP Biology Unit 3.
United States Army Center for Health Promotion & Preventive Medicine.
Amplification of Genomic DNA Fragments OrR. Amplification To get particular DNA in large amount Fragment size shouldn’t be too long The nucleotide sequence.
Real-Time Quantitative PCR Basis
Biotechnology and Genetic Engineering. Human Cloning-The Science In The News.
Figure 1: Basic Principle Of PCR * Poor precision * Low sensitivity * Short dynamic range < 2 logs * Low resolution * Non-automated * Size-based discrimination.
Microbiology B.E Pruitt & Jane J. Stein AN INTRODUCTION EIGHTH EDITION TORTORA FUNKE CASE Chapter 10, part B Classification of Microorganisms.
The Application of Real-Time PCR in the Diagnosis of Infectious Disease The Application of Real-Time PCR in the Diagnosis of Infectious Disease T.P.Sloots.
Molecular Testing and Clinical Diagnosis
Dye-binding/High-resolution Thermal Denaturation PCR-what makes or breaks fragment analysis Steven F. Dobrowolski, PhD.
USAMRIID Development, Comparison, and Use of Nucleic Acid-Based Diagnostics to Detect Arboviruses in the Field LTC Monica O’Guinn and Dr. John Lee US Army.
Biotech. Cloning a mammal PCR This is the polymerase chain reaction. It is a technique to multiply a sample of DNA many times in a short period of time.
PCR With PCR it is possible to amplify a single piece of DNA, or a very small number of pieces of DNA, over many cycles, generating millions of copies.
Biotech. Southern Blotting Through a series of steps, DNA that has been separated by electrophoresis is applied to a membrane of nylon or nitrocellulose.
Real-Time PCR.
R EAL TIME P CR 1. L IMITATIONS OF E ND -P OINT PCR Poor Precision Low sensitivity Low resolution Non - Automated Size-based discrimination only Results.
SYBR Green I Chemistry Detects all double stranded DNA
DNA Sequencing A population of DNA fragments is generated. –One end is common to all fragments (the 5’ end of the sequencing primer). –The other end terminates.
Higher Human Biology Unit 1 Human Cells KEY AREA 5: Human Genomics.
Kevin Chen.  A method of amplifying or copying DNA fragments.
بسم الله الرحمن الرحيم.
PCR is amplification of DNA in a tube What to put in the PCR tube?? Template DNA DNA cDNA obtained by reverse transcription of mRNA Or Cell free.
Measurement Methods in Systems Biology
SNPs in forensic genetics: a review on SNP typing methodologies
Application of Rapid-Cycle Real-Time Polymerase Chain Reaction for the Detection of Microbial Pathogens: The Mayo-Roche Rapid Anthrax Test  James R. Uhl,
Midterm Review Feb
Principles of Real-Time Quantitative PCR Techniques
Nucleic acid-based methods (I)
Minimal Residual Disease (MRD) Detection Technologies
US Army Medical Research and Materiel Command
Application of Rapid-Cycle Real-Time Polymerase Chain Reaction for the Detection of Microbial Pathogens: The Mayo-Roche Rapid Anthrax Test  James R. Uhl,
Rapid detection of resistance in Mycobacterium tuberculosis: a review discussing molecular approaches  D. García de Viedma  Clinical Microbiology and.
Multiplex Detection of Ehrlichia and Anaplasma Species Pathogens in Peripheral Blood by Real-Time Reverse Transcriptase-Polymerase Chain Reaction  Kamesh.
A DNA computing readout operation based on structure-specific cleavage
DNA Sequencing A population of DNA fragments is generated.
LightCycler Technology in Molecular Diagnostics
Ali Zirakzadeh, MD, Robin Patel, MD  Mayo Clinic Proceedings 
Long-Range (17.7 kb) Allele-Specific Polymerase Chain Reaction Method for Direct Haplotyping of R117H and IVS-8 Mutations of the Cystic Fibrosis Transmembrane.
Single-Run, Parallel Detection of DNA from Three Pneumonia-Producing Bacteria by Real-Time Polymerase Chain Reaction  Reinhard B. Raggam, Eva Leitner,
Development of a real-time fluorescence resonance energy transfer PCR to identify the main pathogenic Campylobacter spp.  A. Ménard, F. Dachet, V. Prouzet-Mauleon,
A Multi-Site Study for Detection of the Factor V (Leiden) Mutation from Genomic DNA Using a Homogeneous Invader Microtiter Plate Fluorescence Resonance.
Development of a Quantitative Real-Time Polymerase Chain Reaction Assay for the Detection of the JAK2 V617F Mutation  Elizabeth C. Wolstencroft, Katy.
A Simple and Rapid Genotyping Assay for Simultaneous Detection of Two ADRB2 Allelic Variants Using Fluorescence Resonance Energy Transfer Probes and Melting.
Fluorescent in situ hybridization (FISH)
RealTime-PCR.
Real-Time PCR.
Nutrition. Good Food Health.
Presentation transcript:

Detection of Arthropod-Borne Pathogens Using PCR Techniques Melissa Miller Entomologist US Army Center for Health Promotion & Preventive Medicine, Fort George G. Meade, MD

Real-Time PCR Protocols Tick-Borne Pathogens Ehrlichia Species E. chaffeensis, E. ewingii, and Anaplasma phagocytophilum –Hybridization Probes Anaplasma phagocytopilum –Hydrolysis Probes Rickettsia Rickettsia spp. –Hydrolysis Probes

Real-Time PCR Protocols continued Tick-Borne Pathogens Borrelia Species B. burgdorferi –Hydrolysis Probes Borrelia spp. –Hydrolysis Probes

Conventional PCR Protocols Tick-Borne Pathogens Borrelia Species B. burgdorferi OspA Borrelia spp. FLA Ehrlichia Species E. chaffeensis Anaplasma phagocytophilum

Conventional PCR Protocols continued Tick-Borne Pathogens Rickettsia Rickettsia spp. –RFLP to species

DETECTION OF ARTHROPOD-BORNE PATHOGENS USING REAL-TIME POLYMERASE CHAIN REACTION TECHNIQUES Hybridization Cleavage Emission FRET Real-time techniques for detection of DNA from tick-borne pathogens Real-time techniques for detection of DNA from tick-borne pathogens Hydrolysis Probes FRET-Fluorescence Resonance Energy Transfer Graphics from the Second Joint Symposium on Food Safety and Nutrition kindly provided by Dr.Guy Van den Eede

DETECTION OF ARTHROPOD-BORNE PATHOGENS USING REAL-TIME POLYMERASE CHAIN REACTION TECHNIQUES Real-time techniques for detection of DNA from tick-borne pathogens Real-time techniques for detection of DNA from tick-borne pathogens Hybridization Probes FRET-Fluorescence Resonance Energy Transfer Amplification Hybridization Emission FRET Graphics courtesy of Roche Molecular Biochemicals Inc.

Melting Curve Analysis Sequence Confirmation Highly Specific Each product has a specific T M Take advantage of different fluorescent dyes and formats Eliminates inclusion of primer-dimers

A. phagocytophila ºC E. chaffeensis º C E. ewingii º C