A New Sets of Accurate Multi-level Methods Including Parameterization for Heavy Elements Yi-Lun Sun, Wei-Ping Hu* Department of Chemistry and Biochemistry,

Slides:



Advertisements
Similar presentations
Introduction to Computational Chemistry NSF Computational Nanotechnology and Molecular Engineering Pan-American Advanced Studies Institutes (PASI) Workshop.
Advertisements

Introduction to Møller-Plesset Perturbation Theory
Quantum Mechanics Calculations II Apr 2010 Postgrad course on Comp Chem Noel M. O’Boyle.
Molecular Modeling Using HPC and Gaussian: Density-Functional Theory and Noncovalent Interactions Gino A. DiLabio National Institute for Nanotechnology.
A New Set of Accurate Multi-level Methods Including Parameterization for Heavy Elements 演講者:孫翊倫 (Yi-Lun Sun) 指導教授:胡維平 (Wei-Ping Hu) 中華民國 101 年 6 月 11 日.
CHIRPED-PULSE FOURIER-TRANSFORM MICROWAVE SPECTROSCOPY OF THE PROTOTYPICAL C-H…π INTERACTION: THE BENZENE…ACETYLENE WEAKLY BOUND DIMER Nathan W. Ulrich,
B3LYP study on the lowest energy Pt clusters and their reactivity towards small alkanes T. Cameron Shore, Drake Mith, and Yingbin Ge* Department of Chemistry,
B3LYP study of the dehydrogenation of propane catalyzed by Pt clusters: Size and charge effects T. Cameron Shore, Drake Mith, Staci McNall, and Yingbin.
Silver Nyambo Department of Chemistry, Marquette University, Wisconsin Resonance enhanced two-photon ionization (R2PI) spectroscopy of halo-aromatic clusters.
Chemistry 6440 / 7440 Semi-Empirical Molecular Orbital Methods.
Praha Ostrava Abstract Ab initio calculations Potential energy surface fit Outlooks Financial support: the Ministry of Education, Youth, and Sports of.
High-accuracy ab initio water line intensities Lorenzo Lodi University College London Department of Physics & Astronomy.
Calculating Molecular Properties
An Introduction to Molecular Orbital Theory. Levels of Calculation Classical (Molecular) Mechanics quick, simple; accuracy depends on parameterization;
Computational Chemistry
Virginia State University General Chemistry I Chem 161 Fall 2011 Dr. Victor Vilchiz.
Conclusions The spin density surfaces of the antiferromagnetic ground states demonstrate opposite spins at the ends, and alternating spins along the length.
TAUTOMERIZATION IN BIOMOLECULES as Investigated by Quantum Chemistry and Molecular Dynamics: Cytosine and Cytidine Géza Fogarasi, Institute of Chemistry,
Physical Chemistry 2 nd Edition Thomas Engel, Philip Reid Chapter 23 The Chemical Bond in Diatomic Molecules.
Relativistic Effects on the Heavy Metal-ligand NMR Spin-spin Couplings Copyright, 1996 © Dale Carnegie & Associates, Inc. Jana Khandogin and Tom Ziegler.
1 Li Xiao and Lichang Wang Department of Chemistry & Biochemistry Southern Illinois University Carbondale The Structure Effect of Pt Clusters on the Vibrational.
Chemical Periodicity.
RESULTS I: Comparison for the different rare-gases Xenon SO constant = eV E( 2 P 1/2 ) – E( 2 P 3/2 ) = eV D 0 (Xe 3 + ) = eV 1 Experiment:
國立中正大學 化學暨生物化學研究所 博士論文口試 孫翊倫 (Yi-Lun Sun) 指導教授:胡維平 (Wei-Ping Hu) 中華民國 101 年 7 月 10 日.
Theoretical Study of Photodissociation dynamics of Hydroxylbenzoic Acid Yi-Lun Sun and Wei-Ping Hu* Department of Chemistry and Biochemistry, National.
H y = E y Density-Functional Theory SchrÖdinger Equation Wavefunction
Electrostatic Effects in Organic Chemistry A guest lecture given in CHM 425 by Jack B. Levy March, 2003 University of North Carolina at Wilmington (subsequently.
1 The Structure and Ring Puckering Barrier of Cyclobutane: A Theoretical Study Sotiris S. Xantheas, Thomas A. Blake Environmental Molecular Sciences Laboratory.
ChE 551 Lecture 23 Quantum Methods For Activation Barriers 1.
Model Chemistries Lecture CompChem 4 Chemistry 347 Hope College.
JULIEN TOULOUSE 1, ANDREAS SAVIN 2 and CARLO ADAMO 1 1 Laboratoire d’Electrochimie et de Chimie Analytique (UMR 7575) – Ecole Nationale Supérieure de Chimie.
Water layer Protein Layer Copper center: QM Layer Computing Redox Potentials of Type-1 Copper Sites Using Combined Quantum Mechanical/Molecular Mechanical.
Via a low energy barrier, the dominant product will be determined by the activation barrier to form each product. 1 The benzene oxide/oxepin system plays.
2 Outline Background Objective Quantum Chemical Analysis Combinatorial Study and Data Mining Conclusion.
Chem Electron Attachment Enthalpy,  H° ea The enthalpy change for the gain of an electron,E (g) + e -  E - (g) Electron Affinity: EA = -  H°
Chemical Reactions in Ideal Gases. Non-reacting ideal gas mixture Consider a binary mixture of molecules of types A and B. The canonical partition function.
Towards experimental accuracy from the first principles Ab initio calculations of energies of small molecules Oleg L. Polyansky, L.Lodi, J.Tennyson and.
MODELING MATTER AT NANOSCALES 3. Empirical classical PES and typical procedures of optimization Classical potentials.
Daniel Hrivňák, Ivan Janeček and René Kalus Department of Physics, University of Ostrava, Ostrava, Czech Republic Supported by the Grant Agency of the.
TURBOMOLE Lee woong jae.
指導教授:胡維平 (Wei-Ping Hu)
Why should You learn Chemistry? Required –Pharmacists –Doctors –Dentists –Chem Engineer, etc. Need it to pass Standardized Exams, Boards, etc. –MCAT –PCAT.
Int. Symp. Molecular Spectroscopy Ohio State Univ., 2005 The Ground State Four Dimensional Morphed Potentials of HBr and HI Dimers Collaborator: J. W.
CMx Charges for SCC-DFTB and Some GaN Vignettes Christopher J. Cramer University of Minnesota.
Computational Studies of the Electronic Spectra of Transition-Metal-Containing Molecules James T. Muckerman, Zhong Wang, Trevor J. Sears Chemistry Department,
Effective C 2v Symmetry in the Dimethyl Ether–Acetylene Dimer Sean A. Peebles, Josh J. Newby, Michal M. Serafin, and Rebecca A. Peebles Department of Chemistry,
1 HOONO ISOMERIZATION TO HONO 2 INVOLVING CONICAL INTERSECTIONS T. J. DHILIP KUMAR, and JOHN R. BARKER Department of Atmospheric, Oceanic and Space Sciences,
Quantum Methods For Adsorption
1 MODELING MATTER AT NANOSCALES 6. The theory of molecular orbitals for the description of nanosystems (part II) Perturbational methods for dealing.
Computational Challenges in the Simulation of Water & Ice: the Motivation for an Improved Description of Water-Water Interactions R OH = Å  HOH.
國立中正大學 化學暨生物化學研究所 博士班資格考試 ( 第一階段口試 ) 孫翊倫 (Yi-Lun Sun) 指導教授:胡維平 (Wei-Ping Hu) 中華民國 99 年 7 月 14 日.
Microwave Spectroscopy and Internal Dynamics of the Ne-NO 2 Van der Waals Complex Brian J. Howard, George Economides and Lee Dyer Department of Chemistry,
Spectroscopic and Theoretical Determination of Accurate CH/  Interaction Energies in Benzene-Hydrocarbon Clusters Asuka Fujii, Hiromasa Hayashi, Jae Woo.
1 σ-Aromaticity about cyclopropene Dewar firstly deduced in 1979, that cyclopropene should have σ-Aromaticity with the aromaticity energy to cyclopropane.
Advanced methods of molecular dynamics 1.Monte Carlo methods 2.Free energy calculations 3.Ab initio molecular dynamics 4.Quantum molecular dynamics 5.Trajectory.
Valence Bond Theory * Why doing VB? * Basic principles * Ab initio methods * Qualitative VB theory.
Molecular Modeling: Molecular Mechanics C372 Introduction to Cheminformatics II Kelsey Forsythe.
Structure of Presentation
Substitution Structures of Large Molecules and Medium Range Correlations in Quantum Chemistry Calculations Luca Evangelisti Dipartmento di Chimica “Giacomo.
Van der Waals dispersion in density functional theory
A PROTOCOL FOR HIGH-ACCURACY THEORETICAL THERMOCHEMISTRY
Computational Chemistry:
Statistical Mechanics and Multi-Scale Simulation Methods ChBE
Notes: The Periodic Table.
Periodicity Electron affinity.
A computational chemist´s guide to accurate
The Periodic Table Big Idea #2 Electrons and the Structure of Atoms
Density Functional Resonance Theory of Metastable Negative Ions
Benchmark Quantum Monte Carlo Calculations for Carbon and Hydrocarbon Species James B. Anderson, Department of Chemistry, Pennsylvania State University.
Materials Oriented Modelling - Catalysis and Interactions in Solid and Condensed Phases Stockholm, Sweden on 28 June - 1 July, 2009.
Presentation transcript:

A New Sets of Accurate Multi-level Methods Including Parameterization for Heavy Elements Yi-Lun Sun, Wei-Ping Hu* Department of Chemistry and Biochemistry, National Chung Cheng University, Chia-Yi County, Taiwan, Republic of China Abstract We have developed a new series of multi-coefficient electronic structure methods that including parameterization for heavy elements. New database was taken from our last MLSE(Cn)-DFT method and added 10 atomization energies of Br and I containing molecules (Br 2, I 2, HI, IBr, HBr, ICl, NOBr CH 3 I, CH 3 Br, C 2 H 5 I ), ionization potentials and electron affinities of Br and I. Several methods have been developed this time, we called them MLSE(HA-n) methods. The most important correction term was SCS-MP2(spin component scaled MP2) correction. The best method MLSE(HA-1) gave an average mean unsigned error (MUE) 0.57 kcal/mol on 225 thermochemical kinetics data. It also gave average error less than 1.0 kcal/mol for 10 AEs of Br and I containing molecules. In comparison, the MLSE(C1)-DFT gave an MUE of 1.77 kcal/mol on the same test set. The new methods MLSE(HA-1) takes 60% more computer time than MLSE(C1)-DFT method. This new method is suitable for thermochemical kinetics study on systems containing heavy halogens. This is also the first developed Multi-Level methods for 4- and 5- row elements Introduction Traditionally, the accuracy of quantum chemical calculation is a very important goal in comparison with experiment. To approach the high accuracy, we can use very high-level theories, such as QCISD(T) and CCSD(T), with large basis sets. However, the costs of these methods are prohibitively high except for very small molecules. Finding high accuracy and economic methods is the most important goal in the quantum chemical calculation area. In the past two decades, this goal had been realized by the so-called multi-level methods or multi-coefficient methods. Our group had also published MLSE(n)+d, MLSE-DFT and MLSE(Cn)-DFT methods in the last five years. However, these methods are all designed for the first to third rows main group elements. This time, the MLSE(HA-n) method is our first and the worldly first published multi-coefficient methods for heavy halogens. Methods In the so-called “multi-coefficient methods”, we used scaled energy components in the multi-level methods, all of the scaling coefficients for the various energy components were optimized against databases of experimentally derived or high-level theoretical energies. Two developed methods MLSE(HA-n)(n=1,2) are shows right(Eq.1), pdz means cc-pV(D+d)Z, apdz means aug-cc-pV(D+d)Z, ptz means cc- pV(T+d)Z, and aptz means aug-cc-pV(T+d)Z. E2aa means the alpha-alpha spin component E2 energy in the MP2 calculation, the same abbreviation for bb(beta-beta) and ab(alpha-beta). For elements not in the second row, the original cc-pVnZ and aug- cc-pVnZ (n = D, T) basis sets were used. For iodine, we used cc-pVnZ-pp and aug-cc- pVnZ-pp (n = D, T) basis sets instead of the inexistent Dunning’s basis sets. The training set is the same with test set that including 109 main-group atomization energies (AEs), 38 hydrogen-transfer barrier heights (HTBHs), 38 non- hydrogen-transfer barrier heights (NHTBHs), 13 ionization potential (IPs) energies and 13 electron affinity (EAs) energies, respectively, that originally used in the MLSE(Cn)-DFT method, totally 211 energies. And additional ten heavy atom atomization energies(HAAEs) containing Br and I atoms, two IPs and two EAs of Br and I(HAIP and HAEA) that added this time in MLSE(HA-n) method, totally 225 energies. New added training set are listed in table 1. The MLSE(HA-1) method consists of several ab initio energy components and MPW1PW91/aptz+apdz terms. The MLSE(HA-2) method omits QCISD(T)/apdz Results Figure 1 shows the MUE(225), HASE(10) and costs comparison of these methods. The cost and MUE of in Figure 1 shows MLSE(HA-n) method get large improvement to MLSE(Cn)-DFT methods in the HAAE(10). Table 2 shows the comparison of our new methods and several related methods. MLSE(C1)- M062X (Eso) is the original version only added Eso and re-optimized aim MUE(211). MLSE(C1)- M062X-HA is the same method that optimized aim MUE(225). By our testing, the SCS-MP2 correction term play a very important rule in our new method. However, the effect of SCS-MP2 is not very clear in the MLSE(Cn)-DFT method. Reference 1.Sun, Y.-L, Li, T.-H., Chen, J.-L., Hu, Chen, W.-P. Chem. Phys. Lett. 2009, 475, Grimme, S. J. Chem. Phys. 2003, 118, Szabados, A. J. Chem. Phys. 2006, 125, Kozuch, S.; Gruzman, D.; Martin, J. M. L. J. Phys. Chem. C 2010, 114, Conclusions The aim of the current study was to develop a set of accurate and economical hybrid multi-coefficient methods for the study of thermochemical kinetics that are widely useful for the main group elements. These two methods provided the overall MUE of 0.58~0.64 kcal/mol, which also are very accurate for the heavy halogens that the overall MUE is less than 1.0 kcal/mol. We expect that the new MLSE(HA-n) methods can easily be applied to many types of interesting chemical systems with heavy atoms, and they will be invaluable for accurate study of thermochemistry and kinetics. Table 2 Mean unsigned errors (kcal/mol) obtained using the MLSE(HA-n) methods and other related methods. E(MLSE(HA-1)) and E(MLSE(HA-2))= C WF { E(HF/pdz) + C HF+ [E(HF/apdz) – E(HF/pdz]) + C B1HF [E(HF/ptz) – E(HF/pdz]) + C B2HF [E(HF/aptz) – E(HF/ptz]) + C E2S [(E2aa+E2bb)/pdz] + C E2O [(E2ab)/pdz] + C E2+S [(E2aa+E2bb)/apdz] + C E2+O [(E2ab)/apdz] + C B1E2S [(E2aa+E2bb)/ptz] + C B1E2O [(E2ab)/ptz] + C B2E2S [(E2aa+E2bb)/aptz] + C B2E2O [(E2ab)/aptz] + C E34D [E(MP4D/pdz) – E(MP2/pdz)] } + C E34D+ [E(MP4D/apdz) – E(MP4D/pdz)] } + C B1E34D [E(MP4D/ptz) – E(MP4D/pdz)] } + C E34 [E(MP4SDQ/pdz) – E(MP4D/pdz)] } + C E34+ [E(MP4SDQ/apdz) – E(MP4SDQ/pdz)] } + C B1E34D [E(MP4MP4SDQ/ptz) – E(MP4SDQ/pdz)] } + C QCID [E(QCISD/pdz) – E(MP4SDQ/pdz)] + C QCID+ [E(QCISD/apdz) – E(QCISD/pdz)] + C QCI [E(QCISD(T)/pdz) – E(QCISD/pdz)] + C QCI+ [E(QCISD(T)/apdz) – E(QCISD(T)/pdz)] + (1  C WF ) { E(DFT/pdz) + C DFT+ [E(DFT/apdz – DFT/pdz] } + Eso –(1) Figure 1 Comparisons of the MUEs and costs of MLSE(HA-n) methods and MLSE(C1)-M062X-HA method. AE I2I HI73.79 IBr42.27 ICl50.19 Br HBr90.51 NOBr CH 3 I CH 3 Br C2H5IC2H5I IP I Br EA I70.54 Br77.60 calculation, and changes the DFT calculation to B3LYP/apdz+pdz. The MLSE(HA-1) includes additional SCS-MP2 correction terms and QCISD(T)/apdz calculation compared with our previous MLSE(Cn)-DFT method. The spin-orbital correct energies(Eso) were also used in the MLSE(HA-n) methods be cause of the large spin-orbital effect sof Br and I atoms. MLSE(HA-2) is a economic method with costs similar to the MLSE(Cn)-DFT method but suitable for the 4- and 5- row elements. Table 1 New data (kcal/mol) AE(109)IP(13)EA(13)HTBHNHTBHMUE(211) MCG3-MPWB G3SX MLSE(C1)-M062X AE(119)IP(15)EA(15)HTBHNHTBHMUE(211)HAAEHAIPHAEAMUE(255) MLSE(C1)-M062X (Eso) MLSE(C1)-M062X-HA MLSE(HA-1) MLSE(HA-2)