Hybrid Model For Prostate Tumorigenesis Maria Audi Byrne, University of South Alabama MMA Florida Chapter Meeting 5:15 – 5:40 PM November 20, 2009.

Slides:



Advertisements
Similar presentations
Early Embryonic Development Maternal effect gene products set the stage by controlling the expression of the first embryonic genes. 1. Transcription factors.
Advertisements

Mathematical and Computational Modeling of Epithelial Cell Networks Casandra Philipson Computational Immunology PhD MIEP June 11, 2014.
Metastasis. Mechanisms of Invasion and Metastasis.
Cancer Biology. 2 Outline 1.How do cancer cells differ from normal cells? Tumor progression Molecular basis for cancer.
Models and methods in systems biology Daniel Kluesing Algorithms in Biology Spring 2009.
Urokinase Plasminogen Activator (uPA) and its Receptor uPAR.
SCB : 1 Department of Computer Science Simulation and Complexity SCB : Simulating Complex Biosystems Susan Stepney Department of Computer Science Leo Caves.
The Trees for the Forest A Discrete Cell Model of Tumor Growth, Development, and Evolution Ph.D. student in Mathematics/Computational Bioscience Dept.
“Modeling and simulation of cancer immunoprevention vaccine” by F.Pappalardo et al Summary by Dhondup Pemba SoCalBSI.
Discrete models of biochemical networks Algebraic Biology 2007 RISC Linz, Austria July 3, 2007 Reinhard Laubenbacher Virginia Bioinformatics Institute.
Dialogue Replaces Monologue:
Cellular senescence, cancer and aging Buck Institute for Age Research Lawrence Berkeley National Laboratory September 10, 2005 SENS2, Cambridge.
Changes in Tumor Growth and Metastatic Capacities of J82 Human Bladder Cancer Cells Suppressed by Down-regulation of Calreticulin Expression Speaker: Yi-Chien.
Notes on Modeling with Discrete Particle Systems Audi Byrne July 28 th, 2004 Kenworthy Lab Meeting Deutsch et al.
Clinical Division of Oncology Department of Medicine I Medical University of Vienna, Austria Cancer Biology.
Human Biology Sylvia S. Mader Michael Windelspecht
A mathematical model of necrotizing enterocolitis Jared Barber Department of Mathematics, University of Pittsburgh Work with Ivan Yotov and Mark Tronzo.
Companion PowerPoint slide set Obesity-associated breast cancer risk: a role for epigenetics? This teacher slide set was created by Dana Haine, MS, of.
Characteristics of Cancer. Promotion (reversible) Initiation (irreversible) malignant metastases More mutations Progression (irreversible)
The Cancer Systems Biology Consortium (CSBC)
MA354 Mathematical Modeling T H 2:45 pm– 4:00 pm Dr. Audi Byrne.
Mathematical Modelling of Cancer Invasion of Tissue: The Role of the Urokinase Plasminogen Activation System Mark Chaplain and Georgios Lolas Division.
Cell Cycle and Cancer.
Stochastic Model of Microdomain Formation in Biological Membranes Audi Byrne May 19 th 2005 MPB Retreat Biomathematics Study Group.
Regulating the Cell Cycle Chapter Controls on Cell Division When there is an injury such as a cut in the skin or break in a bone, the cells at the.
Lesson Overview Lesson Overview Regulating the Cell Cycle Lesson Overview 10.3 Regulating the Cell Cycle.
10.3 Regulating the Cell Cycle
Math 449 Dynamical systems in Biology and Medicine. D. Gurarie Overview.
1 Computational Modeling in Quantitative Cancer Imaging Biomedical Science and Engineering Conference 18 March 2009 Tom Yankeelov, Nkiruka Atuegwu, John.
Cell-based models of morphogenesis in normal and pathogenic development - Continued Maria Audi Byrne September 21 st 2007 Mathbiology and Statistics Seminar.
1. Epithelial Mesenchymal Transition ( EMT ) 2 3.
Understanding Cancer and Related Topics
Regulating The Cell Cycle. Warm Up – The Cell Cycle The cell spends 80% of the time in _______________ and 20% of the time in ________________ What are.
Modeling the cell cycle regulation by the RB/E2F pathway Laurence Calzone Service de Bioinformatique U900 Inserm / Ecoles de Mines / Institut Curie Collaborative.
10.3 Regulating the Cell Cycle
CELLULAR AGING AND LONGEVITY Lawrence Berkeley National Laboratory Buck Institute for Age Research.
Regulating The Cell Cycle. Warm Up – The Cell Cycle The cell spends 80% of the time in _______________ and 20% of the time in ________________ What are.
Cell-based models of morphogenesis in normal and pathogenic development - Continued Maria Audi Byrne September 21 st 2007 Mathbiology and Statistics Seminar.
LACK OF TRANSFORMING GROWTH FACTOR- Β SIGNALING PROMOTES COLLECTIVE CANCER CELL INVASION THROUGH TUMOR- STROMAL CROSSTALK PRESENTED BY JONAKI BOSE.
Companion PowerPoint slide set Obesity-associated breast cancer risk: a role for epigenetics? This teacher slide set was created by Dana Haine, MS, of.
10.3 Regulating the Cell Cycle
10.3 Regulating the Cell Cycle
10.3 Regulating the Cell Cycle
Gatekeeper, caretaker, and landscaper mutations
Kusumawadee Utispan, Sittichai Koontongkaew 
Unit 5: Cell Growth and Development 5.3 Control of the Cell Cycle
Over-Expression of HER2 Causes Cancer: A Mathematical Model
10.3 Regulating the Cell Cycle
10.3 Regulating the Cell Cycle
Inflammation and Colon Cancer
Biology and Clinical Applications of Pancreatic Cancer Stem Cells
Hallmarks of Cancer Covered
Mesenchymal Cells in Colon Cancer
Cancer Metastasis: Building a Framework
Homeostasis in the breast
Cancer: When The Cell Cycle Goes Wrong
Barbara Jung, Jonas J. Staudacher, Daniel Beauchamp  Gastroenterology 
10.3 Regulating the Cell Cycle
Volume 95, Issue 1, Pages (July 2008)
Tumor Promotion via Injury- and Death-Induced Inflammation
The Gastrointestinal Tumor Microenvironment
The Dual Role of Bone Morphogenetic Proteins in Cancer
Cancer Invasion and the Microenvironment: Plasticity and Reciprocity
10.3 Regulating the Cell Cycle
10.3 Regulating the Cell Cycle
Kelsey J. Roberts, Aaron M. Kershner, Philip A. Beachy  Cancer Cell 
Cell Growth and Division
Under Pressure: Stromal Fibroblasts Change Their Ways
Cell Growth and Division
Presentation transcript:

Hybrid Model For Prostate Tumorigenesis Maria Audi Byrne, University of South Alabama MMA Florida Chapter Meeting 5:15 – 5:40 PM November 20, 2009

Presentation Outline 1.Biology Context: Cell Microenvironments 2.Motivation: Tissue Recombination Expts 3.Two-Step Model of Tumorigenesis 4.Hybrid Computation Model

I. Biology Context: Cell Microenvironments

Core B: Image Fusion Gore Core C: Biomath & Bioinformatics Shyr Project 3: Bone metastasis Mundy Vanderbilt-Ingram Cancer Center Mouse Models of Human Cancer Consortium Vanderbilt Integrative Cancer Biology Center Prostate Center Center for Bone Biology VU Institute for Imaging Sciences Breast SPORE BioMathematics Small animal imaging Proteomics Core A: Protein collection & Proteomics Caprioli Biostatistics Project 1: Breast Cancer Moses Matrisian TGF  effectors Vanderbilt University Tumor Microenvironment Network VUTMEN Project 2: Prostate Cancer Hayward & Bhowmick

Paracrine Signaling Occurs when a cell or tissue produces a factor which acts upon an adjacent tissue.

TGF  as a master regulator of host:tumor interactions Bierie and Moses, Cytokine Growth Factor Reviews, 2006

Core B: Image Fusion Gore Core C: Biomath & Bioinformatics Shyr Project 3: Bone metastasis Mundy Vanderbilt-Ingram Cancer Center Mouse Models of Human Cancer Consortium Vanderbilt Integrative Cancer Biology Center Prostate Center Center for Bone Biology VU Institute for Imaging Sciences Breast SPORE BioMathematics Small animal imaging Proteomics Core A: Protein collection & Proteomics Caprioli Biostatistics Project 1: Breast Cancer Moses Matrisian TGF  effectors Vanderbilt University Tumor Microenvironment Network VUTMEN Project 2: Prostate Cancer Hayward & Bhowmick

Prostate Cancer From Wikipedia: Prostate cancer is one of the most common cancers affecting older men in developed countries and a significant cause of death for elderly men (estimated by some specialists at 3%). Many men never know they have prostate cancer. Autopsy studies of men who died of other causes have found prostate cancer in thirty percent of men in their 50s, and in eighty percent of men in their 70s. [Breslow et al, 1977]

II. Tissue Recombination Experiments

Tissue Recombination Experiments Normal stromal cells were mixed with altered stromal cells. The altered stromal cells were unable to respond to TGF-beta. Effect on epithelial cells was observed for different ratios of normal and altered cells. Drs. Neil Bhowmick and Hal Moses, VUMC

Tissue Recombination Experiments 100% normal cells  normal epithelia 100% altered cells  PIN 50/50 mixture  PIN AND Invasion Intermediate levels of altered stroma yield the worst epithelial changes. Drs. Neil Bhowmick and Hal Moses (Proliferative)

Mathematical modeling of epithelial-stromal interactions Modeling Goal How can we define epithelial and stromal cell rules that (1) are biologically motivated, (2) model correct proliferative behavior, (3) model correct invasive behavior? Method: Hypothesize a set of simplified biologically motivated rules and use computer simulations to check if they are sufficient to yield expected cell behaviors. Warning: If successful, we identify rules that are sufficient to explain experimental observations. Discourse between model predictions and further experiments are needed to further validate/refine the model.

III. Two Step Model of Tumorigenesis

Two-Step Model of Tumorigenesis Experimental Observation 100% Normal  Normal 50/50 Mix  PIN & Invasion 100% Altered  PIN

Two-Step Model of Tumorigenesis Experimental Observation 100% Normal  Normal 50/50 Mix  PIN & Invasion 100% Altered  PIN Model Step 1: Normal  PIN Morphogen location: altered stroma Step 2: PIN  Invasive Morphogen location: altered stroma

Altered Stroma Normal Epithelium Proliferative Epithelium Invasive Epithelium HGF 1

Normal Stroma Normal Epithelium Proliferative Epithelium Invasive Epithelium SDF1 2

Normal Stroma Altered Stroma Normal Epithelium Proliferative Epithelium Invasive Epithelium HGF SDF 1 2

Normal Stroma Altered Stroma Normal Epithelium Proliferative Epithelium Invasive Epithelium HGF SDF 100% Normal  Normal Epithelium 2 1

Normal Stroma Altered Stroma Normal Epithelium Proliferative Epithelium Invasive Epithelium HGF SDF 100% Altered Stroma  Proliferative Epithelium 2 1

Normal Stroma Altered Stroma Normal Epithelium Proliferative Epithelium Invasive Epithelium HGF SDF 50% Altered Stroma  Invasive Epithelium 2 1

IV. Hybrid Computational Model

Hybrid Model Discrete, Cell-based Component Cells are modeled as discrete, individual entities in 2D space. Stromal and epithelial cells: 5 cell types. Stromal cells are ‘normal’ or ‘altered’. Epithelial cells are ‘normal’, ‘proliferative’ or ‘invasive’. Different stromal types secrete different morphogens. Epithelial cells progress sequentially from normal to proliferative to invasive if there are threshold levels of the required morphogen.

Hybrid Model Continuous, PDE Component Morphogen production, diffusion and decay is modeled with the heat equation. Production rates k 1, k 2 (s -1 ) Diffusion rates D 1, D 2 Decay rates k d1, k d2

Morphogen Concentrations

Simulation Results PIN Invasion

Phase Diagram: Transitions Depend Weakly on Production Levels

‘Most Susceptible’ Epithelial Cells

Future Directions Are similar step-models workable for other situations in which TGFB is both tumor suppressive and tumor promoting? Developing a dynamic model of normal prostate duct development that includes cell division (proliferation) and cell movement (migration). Morphogens robustly regulate and “tune” the prostate geometry for a ‘good’ but stochastic configuration. Updating developmental model for wound healing (healthy response to injury) and tumorigenesis (inappropraite response to injury).

Thank You