A Gene Expression Barcode for Microarray Data Rafael A Irizarry.

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Presentation transcript:

A Gene Expression Barcode for Microarray Data Rafael A Irizarry

Zilliox MJ and Irizarry RA (2007) Nature Methods 4(11):

Probe Effect

Barcode

T

AugustMay

Thanks!

Human Tissues Memory T cells cells (Kidney HEK) B lymphoblast cell line 2 Adrenal Gland 2 Atrial myocardium 30 Amygdala 2 Left ventricular apex samples 6 Appendix 2 Atrioventricular Node 2 Bronchial epithelia 15 CD71 Early Erythroid Progenito2 Bone marrow CD34+ 8 Bone Marrow 2 Caudate nucleus 33 Stem Cells (Umbilical Cord CD34+ 9 Na\225ve CD4 cells 3 Single positive CD4 cells 3 Cerebellum 29 Cerebellum peduncles 2 Ciliary ganglion 2 Colorectal adenocarcinoma 2 T cells 6 Cultured adipocyte 2 Lung 11 DRG 2 Esophageal Epithelium 8 Fetal Brain 2 Fetal Lung 2 Fetal Thyroid 2 Vastus lateralis 4 Myometrium 9 Bladder 4 Testis 5 Skeletal myoblast, embryonic 3 Hair follicle bulge 5 Hair follicle sub-bulge 5 Oral squamous cell epithelium 3 Myoblasts 3 Hematopoietic stem cells 3 Frontal Cortex 28 I-6 ES SSEA+ 3 I-6 ES SSEA- 3 Hematopoeitic stem cell- FB +/+ 3 Hematopoeitic stem cell- MB +/+ 3 Hematopoeitic stem cell- FB +/- 3 Hematopoeitic stem cell- CB +/- 3 Hematopoeitic stem cell- CB +/+ 3 Hematopoeitic stem cell- BM +/+ 3 Hematopoeitic stem cell- BM +/- 3 Fibroblast 9 HBEC 2 9 HBEC 2 Heart 2 Hippocampus 9 HMEC 3 HUVEC 3 Hypothalamus 25 IB3-1 bronchial epithelial cells 4 Intervertebral disc 4 Islet 2 K562 Cell line 24 Kidney cells 5 Leukemia Chronic Myelogenous (K562) 2 Leukemia Lymphoblastic (MOLT4) 2 Leukemia Promyelocytic (HL-60) 2 Liver 2 Lymph Node 2 Lymphoma Burkitts Daudi 2 Lymphoma Raji 2 Medulla Oblongata 2 Hep-2 4 Colonic mucosal (IBS) 5 Skeletal muscle 3 Occipital Lobe 2 Olfactory Bulb 2 Ovary 2 Pancreas 2 Parietal Lobe 2 CD4 T cell 2 CD8 T cell 2 Placenta 2 Pons 2 Prefrontal Cortex 2 Prostate 2 Quadriceps femoris muscle 3 Salivary Gland 2 Skin 2 Smooth Muscle 2 Spinal Cord 2 Subthalamic Nucleus 2 Superior Cervical Ganglion 2 Temporal Lobe 2 Testi Germ Cell 2 Testi Intersitial 2 Testi Seminiferous Tubule 2 Thalamus 2 Theca cells 4 Thymus 2 Thyroid 2 Tongue 2 Tonsil 2 Intrathymic T cell progenitors 3 Trachea 2 Trigeminal Ganglion 2 Uterus 2 Ventricular myocardium 5